SMTL ID : 9r11.1

Structure of the PRYSPRY domain of human MID2, crystal form II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: M.13, K.85 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: V.67, G.69, S.168, L.169, M.170 Chain B: G.69 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.168, A:S.168

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 2 residues within 4Å: Chain A: H.109, N.110 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhubi, R. et al., Structural analysis of TRIM family PRYSPRY domains and its implications for E3-ligand design. J Struct Biol X (2025)

Release Date

2025-09-10

Peptides

Probable E3 ubiquitin-protein ligase MID2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Probable E3 ubiquitin-protein ligase MID2

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