SMTL ID : 9r1g.1

Cryo-EM structure of human MATE1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

8 x CLR: CHOLESTEROL(Non-covalent)(Covalent)

CLR.1: 13 residues within 4Å: Chain A: T.84, V.88, L.125, C.126, P.129, C.130, L.260, I.264, M.267, W.275, L.549 Ligands: CLR.2, CLR.8 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.88, A:L.125, A:P.129, A:L.260, A:I.264, A:W.275 CLR.2: 11 residues within 4Å: Chain A: P.129, A.132, L.133, N.136, H.139, I.140, L.143, I.556, V.559, V.563 Ligands: CLR.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.129, A:A.132, A:L.133, A:L.133, A:N.136, A:H.139, A:I.140, A:I.140, A:L.143, A:I.556, A:V.559 CLR.3: 6 residues within 4Å: Chain A: F.282, L.283, I.286, F.429 Chain B: F.108 Ligands: CLR.4 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.282, A:I.286, A:F.429, B:F.108, B:F.108 CLR.4: 3 residues within 4Å: Chain A: L.143, R.145 Ligands: CLR.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.143 Hydrogen bonds: A:R.145 CLR.5: 7 residues within 4Å: Chain A: F.128, W.131, L.135, I.561, R.564, F.565 Ligands: CLR.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.128, A:L.135, A:I.561 CLR.6: 4 residues within 4Å: Chain A: P.163, L.218, Y.225 Ligands: CLR.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.163, A:L.218, A:Y.225 CLR.7: 8 residues within 4Å: Chain A: W.131, T.159, I.162, P.163, P.166, Y.225 Ligands: CLR.5, CLR.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.131, A:T.159, A:I.162, A:P.166 CLR.8: 11 residues within 4Å: Chain A: L.76, A.79, V.83, I.140, F.144, Q.146, E.278, S.281, F.282 Chain B: Y.104 Ligands: CLR.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.76, A:A.79, A:V.83, A:I.140, A:I.140, A:F.144, A:F.144, A:F.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romane, K. et al., Structural basis of drug recognition by human MATE1 transporter. Nat Commun (2025)

Release Date

2025-11-05

Peptides

Multidrug and toxin extrusion protein 1: A
Heavy chain of Fab: B
Light chain of Fab: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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Multidrug and toxin extrusion protein 1

Heavy chain of Fab

Light chain of Fab

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