SMTL ID : 9r1p.1

Crystal structure of STUB1 complexed with a compound molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

2 x 01: 1-[3-[1-methyl-4-(pyridin-3-ylmethylamino)pyrazolo[3,4-d]pyrimidin-6-yl]phenyl]-3-[3-(trifluoromethyl)phenyl]thiourea

01.1: 14 residues within 4Å: Chain A: N.21, F.24, V.25, Y.36, T.51, N.52, L.55, K.82, F.86, D.121, P.123, S.124, K.130, K.132 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.24, A:L.55, A:K.132 Hydrogen bonds: A:N.21, A:K.82, A:S.124, A:K.130, A:K.132 pi-Stacking: A:F.24 pi-Cation interactions: A:K.132 01.2: 14 residues within 4Å: Chain B: N.21, F.24, V.25, Y.36, T.51, N.52, L.55, K.82, F.86, D.121, P.123, S.124, K.130, K.132 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.24, B:L.55, B:K.132 Hydrogen bonds: B:N.21, B:K.82, B:S.124, B:K.130, B:K.132 pi-Stacking: B:F.24 pi-Cation interactions: B:K.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, Y. et al., A rapid imaging-based screen for induced-proximity degraders identifies a potent degrader of oncoprotein SKP2. Nat.Biotechnol. (2025)

Release Date

2025-09-17

Peptides

E3 ubiquitin-protein ligase CHIP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

E3 ubiquitin-protein ligase CHIP

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