SMTL ID : 9r2o.1 (1 other biounit)

De novo designed N5 protein fold

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

8 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SCN.4: 1 residues within 4Å: Chain A: P.72 No protein-ligand interaction detected (PLIP) SCN.5: 2 residues within 4Å: Chain A: N.100, K.101 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.101 SCN.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SCN.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SCN.8: 4 residues within 4Å: Chain A: F.105, K.121, K.124, E.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.125 SCN.9: 1 residues within 4Å: Chain A: E.150 No protein-ligand interaction detected (PLIP) SCN.10: 2 residues within 4Å: Chain A: Q.81, R.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.81, A:R.84, A:R.84

2 x K: POTASSIUM ION(Non-covalent)

K.2: 2 residues within 4Å: Chain A: K.65, E.69 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.65 K.3: 5 residues within 4Å: Chain A: T.86, K.89, T.90, L.107, S.111 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.90, A:S.111, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miao, Y. et al., Reimagine accessibility of protein space with generative model. To Be Published

Release Date

2025-05-14

Peptides

N5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N5

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