SMTL ID : 9rf5.1

M. tuberculosis meets European Lead Factory: identification and structural characterization of novel Rv0183 inhibitors using X-ray crystallography: ELF8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 8D5: [(3~{R})-3-oxidanylpyrrolidin-1-yl]-[4-[2-[3-(trifluoromethyloxy)phenyl]-1,3-oxazol-5-yl]phenyl]methanone(Non-covalent)

8D5.1: 21 residues within 4Å: Chain A: G.66, L.67, E.69, H.137, S.138, M.139, L.170, V.171, V.175, V.191, Q.192, L.194, Y.209, V.220, P.221, G.225, L.228, L.256, I.257, H.284, E.285 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.67, A:V.171, A:V.175, A:Q.192, A:L.194, A:L.194, A:I.257 Hydrogen bonds: A:L.67, A:M.139, A:E.285 Halogen bonds: A:P.221

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 4 residues within 4Å: Chain A: T.113, A.114, D.117, E.150 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.117, A:E.150 Hydrogen bonds: A:T.113, A:T.113

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: P.163, A.164, V.165, A.166, A.167, I.257, P.258, G.261 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.165, A:A.166, A:P.258, A:G.261

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 5 residues within 4Å: Chain A: H.76, V.205, A.208, N.288, R.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.76, A:R.292

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: D.43, V.44, R.45, G.100, G.101 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riegler-Berket, L. et al., M. tuberculosis meets European Lead Factory: identification and structural characterization of novel Rv0183 inhibitors using X-ray crystallography. To Be Published

Release Date

2025-08-13

Peptides

Monoacylglycerol lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Monoacylglycerol lipase

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