SMTL ID : 9rfd.2 (1 other biounit)

Human ADP-ribosylhydrolase 3 (ARH3) in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.65, D.66, D.67, D.305 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.65, A:D.66, A:D.67, A:D.305, H2O.7, H2O.8

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: E.60, G.334, Y.335, E.336, E.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.60, A:G.334, A:E.336, A:E.336, A:E.337

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 13 residues within 4Å: Chain A: G.106, A.107, G.108, V.109, F.132, G.136, S.137, Y.138, G.139, N.140, G.141, H.171, I.260 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.106, A:G.106, A:A.107, A:G.108, A:V.109, A:G.136, A:S.137, A:Y.138, A:G.139, A:G.141 Water bridges: A:D.66, A:N.140, A:N.140 Salt bridges: A:H.171, A:H.171 pi-Stacking: A:F.132, A:F.132, A:Y.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parviainen, T.A.O. et al., Discovery and Structural Optimization of 2-Hydrazinopyrimidin-4-one Analogs Inhibiting Human ADP-Ribosylhydrolase ARH3. Acs Chem.Biol. (2025)

Release Date

2025-09-24

Peptides

ADP-ribosylhydrolase ARH3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ADP-ribosylhydrolase ARH3

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