SMTL ID : 9ris.1

Crystal structure of human IDO1 in complex with iDeg-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 10 residues within 4Å: Chain A: E.55, R.159, D.160, G.161, D.162, N.226, K.228, A.229, S.232, V.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.228 Water bridges: A:R.159 PGE.2: 4 residues within 4Å: Chain A: D.52, E.55, S.56, Q.58 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.58

1 x 01: [(1~{R},2~{S},6~{S},8~{R})-4-(4-~{tert}-butylphenyl)sulfonyl-9,9-dimethyl-4-azatricyclo[6.1.1.0^{2,6}]decan-2-yl]methyl ~{N}-(4-methylphenyl)carbamate

01.3: 27 residues within 4Å: Chain A: L.128, V.129, Y.130, C.133, V.134, F.167, F.168, S.171, V.174, E.175, F.218, I.221, F.230, R.235, L.238, G.266, S.267, A.268, Q.270, S.271, V.273, F.274, L.346, H.350, I.353, V.354, I.358 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.130, A:F.167, A:F.167, A:V.174, A:F.218, A:F.230, A:V.273, A:F.274 Hydrogen bonds: A:S.271, A:H.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, B., Identification of a Monovalent Pseudo-Natural Product Degrader Class Supercharging Degradation of IDO1 by its native E3 KLHDC3. To be published

Release Date

2025-10-01

Peptides

Indoleamine 2,3-dioxygenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Indoleamine 2,3-dioxygenase 1

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