SMTL ID : 9sao.1

Cryo-EM structure of SARS CoV-2 RdRp S759A mutant in complex with 20-40mer RNA incorporating remdesivir

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: H.291, C.297, C.302, C.306 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.291, C:C.297, C:C.302, C:C.306 ZN.2: 4 residues within 4Å: Chain C: C.483, H.638, C.641, C.642 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.483, C:H.638, C:C.641, C:C.642

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gordon, C.J. et al., Structural basis for selective remdesivir incorporation by SARS-CoV-2 RNA polymerase, and S759A resistance. Biorxiv (2025)

Release Date

2025-10-01

Peptides

RNA-directed RNA polymerase nsp12: C
Non-structural protein 8: D
Non-structural protein 7: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

E
C

RNA-directed RNA polymerase nsp12

Non-structural protein 8

Non-structural protein 7

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