SMTL ID : 9ua9.1

Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1D6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain C: N.388, G.404, K.405 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain D: N.388, G.404, K.405 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain E: N.388, G.404, K.405 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain C: E.69, N.73 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.73 NAG.5: 1 residues within 4Å: Chain C: N.41 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.41 NAG.6: 4 residues within 4Å: Chain C: N.438, Q.442 Chain D: Q.433, M.437 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Q.433 Hydrogen bonds: C:Q.442 NAG.7: 2 residues within 4Å: Chain D: E.69, N.73 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.73 NAG.8: 1 residues within 4Å: Chain D: N.41 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.41 NAG.9: 4 residues within 4Å: Chain D: N.438, Q.442 Chain E: Q.433, M.437 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:Q.442 Hydrophobic interactions: E:Q.433 NAG.10: 2 residues within 4Å: Chain E: E.69, N.73 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.73 NAG.11: 1 residues within 4Å: Chain E: N.41 No protein-ligand interaction detected (PLIP) NAG.12: 4 residues within 4Å: Chain C: Q.433, M.437 Chain E: N.438, Q.442 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:Q.442 Hydrophobic interactions: C:Q.433

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, P.F. et al., Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1D6. To Be Published

Release Date

2025-04-09

Peptides

1D6-VL: AHI
1D6 VH: BFG
Fusion glycoprotein F0: CDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

H
E

I
D

B
H

F
G

G
I

C
A

D
C

E
B

1D6-VL

1D6 VH

Fusion glycoprotein F0