SMTL ID : 9uaa.1

Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 5C8

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: E.69, N.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73 NAG.2: 3 residues within 4Å: Chain A: N.388, G.404, K.405 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain A: N.41, N.154 Chain G: Q.168 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:N.41, G:Q.168 Water bridges: A:N.154 NAG.4: 2 residues within 4Å: Chain F: E.69, N.73 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.73 NAG.5: 3 residues within 4Å: Chain F: N.388, G.404, K.405 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain A: Q.168 Chain F: N.41, N.154 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain A Hydrogen bonds: F:N.41, A:Q.168 Water bridges: F:N.154 NAG.7: 2 residues within 4Å: Chain G: E.69, N.73 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.73 NAG.8: 3 residues within 4Å: Chain G: N.388, G.404, K.405 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.388 NAG.9: 3 residues within 4Å: Chain F: Q.168 Chain G: N.41, N.154 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain F Hydrogen bonds: G:N.41, F:Q.168 Water bridges: G:N.154, G:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, P.F. et al., Nipah virus fusion glycoprotein in complex with a broadly neutralizing antibody 1D6. To Be Published

Release Date

2025-04-09

Peptides

Fusion glycoprotein F0: AFG
5C8-VL: BHI
5C8-VH: CDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

G
C

B
F

H
E

I
D

C
G

D
H

E
I

Fusion glycoprotein F0

5C8-VL

5C8-VH