SMTL ID : 9ubi.1

Crystal structure of FERONIA kinase and Ferovicin inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x OT5: 1-[6-(3,5-dichloro-4-hydroxyphenyl)-4-({trans-4-[(dimethylamino)methyl]cyclohexyl}amino)-1,5-naphthyridin-3-yl]ethanone(Non-covalent)

OT5.1: 14 residues within 4Å: Chain A: L.49, V.51, G.52, V.57, A.70, K.72, E.88, Y.117, D.118, Y.119, M.120, T.124, L.175, D.186 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.49, A:L.49, A:V.57, A:A.70, A:Y.117, A:Y.117, A:T.124, A:L.175 Hydrogen bonds: A:K.72, A:M.120, A:D.186 Halogen bonds: A:E.88 OT5.2: 14 residues within 4Å: Chain B: L.49, G.50, F.54, V.57, A.70, K.72, E.88, Y.117, D.118, Y.119, M.120, L.175, D.186, K.206 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.49, B:V.57, B:A.70, B:Y.117, B:Y.117, B:L.175 Hydrogen bonds: B:K.72, B:M.120 Halogen bonds: B:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, M.Z. et al., Unveiling FERONIA Receptor Kinase-mediated Cellular Mechanisms with Small Molecule Inhibitor. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-10-29

Peptides

Receptor-like protein kinase FERONIA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Receptor-like protein kinase FERONIA