SMTL ID : 9uoa.1

Crystal structure of HIV-1 Reverse Transcriptase RNase H domain complexed with a galloyl inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.23, E.58, D.78 Ligands: 01.4 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.23, A:E.58, A:D.78, H2O.1, 01.4 MN.2: 5 residues within 4Å: Chain A: D.23, D.78, D.139, R.147 Ligands: 01.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.23, A:D.139

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 1 residues within 4Å: Chain A: D.51 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.51, A:D.51, H2O.2

1 x 01: ~{N}-[4-[4-[3,4,5-tris(oxidanyl)phenyl]carbonylpiperazin-1-yl]sulfonylphenyl]ethanamide

01.4: 13 residues within 4Å: Chain A: D.23, G.24, Q.55, E.58, D.78, S.79, Q.80, Y.81, A.128, D.139, R.147 Ligands: MN.1, MN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.128 Hydrogen bonds: A:Q.55, A:Q.80, A:Y.81, A:R.147 Water bridges: A:Q.80, A:R.147 pi-Cation interactions: A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, S. et al., Structural Analysis of HIV-1 RNase H bound to a Galloyl Active Site Inhibitor and Computational Compound Modification. To Be Published

Release Date

2025-05-14

Peptides

Reverse transcriptase/RNaseH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reverse transcriptase/RNaseH

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