SMTL ID : 9v1j.1

Cryo- EM structure of small subunit (body) of 75S ribosome with P- tRNA from Entamoeba histolytica

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x U- U- A- A- U- A: mRNA(Non-functional Binders)

U-U-A-A-U-A.1: 12 residues within 4Å: Chain C: U.34, A.35, U.36, A.37 Chain D: G.884, U.979, C.980, C.1803, G.1804, C.1805, C.1806, U.1908 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, S. et al., Cryo-EM structure of ribosome from pathogenic protozoa Entamoeba histolytica reveals unique features of its architecture. Nat Commun (2025)

Release Date

2025-10-08

Peptides

40S ribosomal protein S26: A
Small ribosomal subunit protein eS27: B
Small ribosomal subunit protein uS2: E
Small ribosomal subunit protein uS5: F
Small ribosomal subunit protein eS1: G
40S ribosomal protein S4, putative: H
40S ribosomal protein S6: I
40S ribosomal protein S7: J
40S ribosomal protein S8: K
Small ribosomal subunit protein uS4: L
40S ribosomal protein S11, putative: M
40S ribosomal protein S13, putative: N
Ribosomal protein S14, putative: O
40S ribosomal protein S15a, putative: P
40S ribosomal protein S21: Q
40S ribosomal protein S23, putative: R
40S ribosomal protein S24, putative: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
sB

B
sC

E
sb

F
sc

G
se

H
sf

I
sh

J
si

K
sj

L
sk

M
sm

N
so

O
sp

P
sr

Q
sx

R
sy

S
sz

40S ribosomal protein S26

Small ribosomal subunit protein eS27

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS5

Small ribosomal subunit protein eS1

40S ribosomal protein S4, putative

40S ribosomal protein S6

40S ribosomal protein S7

40S ribosomal protein S8

Small ribosomal subunit protein uS4

40S ribosomal protein S11, putative

40S ribosomal protein S13, putative

Ribosomal protein S14, putative

40S ribosomal protein S15a, putative

40S ribosomal protein S21

40S ribosomal protein S23, putative

40S ribosomal protein S24, putative

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