SMTL ID : 9vql.1

Cryo-EM structure of the dimeric Elapor1 mutant

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: T.652, N.665, S.667 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.667 NAG-NAG.2: 3 residues within 4Å: Chain A: H.691, N.710, V.748 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain B: S.674, H.691, N.710, Y.744, V.748, S.749 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: T.652, N.665, S.667 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.146 NAG.6: 7 residues within 4Å: Chain A: G.413, F.414, E.415, N.569, V.570, T.571, Y.580 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.415 Hydrogen bonds: A:N.569 NAG.7: 4 residues within 4Å: Chain A: G.471, N.537, A.538, M.574 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain B: N.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.146 NAG.9: 7 residues within 4Å: Chain B: G.413, F.414, E.415, N.569, V.570, S.579, Y.580 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.415 Hydrogen bonds: B:N.569 NAG.10: 2 residues within 4Å: Chain B: N.537, M.574 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, T. et al., ELAPOR1 is A Copper-Dependent Tethering Factor Driving Proacrosomal Vesicle Fusion in Acrosome Biogenesis. To Be Published

Release Date

2025-07-23

Peptides

Endosome/lysosome-associated apoptosis and autophagy regulator 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Endosome/lysosome-associated apoptosis and autophagy regulator 1