SMTL ID : 9vqm.1

Cryo-EM structure of Elapor1WT in tetrameric form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.675, N.694, V.732, S.733 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain C: H.689, N.708, V.746, S.747 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain D: H.689, T.706, N.708, V.746, S.747 No protein-ligand interaction detected (PLIP)

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.130, T.132 No protein-ligand interaction detected (PLIP) NAG.5: 6 residues within 4Å: Chain A: G.397, F.398, E.399, N.553, S.563, Y.564 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.399 Hydrogen bonds: A:N.553 NAG.6: 7 residues within 4Å: Chain A: P.454, F.456, P.458, N.521, A.522, T.523, M.558 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.456, A:T.523 NAG.9: 1 residues within 4Å: Chain B: N.144 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.144 NAG.10: 6 residues within 4Å: Chain B: F.412, E.413, N.567, T.569, S.577, Y.578 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:E.413 Hydrogen bonds: B:N.567 NAG.11: 7 residues within 4Å: Chain B: P.468, F.470, P.472, N.535, A.536, T.537, M.572 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.470, B:T.537 NAG.13: 1 residues within 4Å: Chain C: N.144 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.144 NAG.14: 7 residues within 4Å: Chain C: F.412, E.413, N.567, T.569, S.577, Y.578, R.580 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:E.413 Hydrogen bonds: C:N.567, C:R.580 NAG.15: 5 residues within 4Å: Chain C: F.470, P.472, N.535, T.537, M.572 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.470, C:T.537 NAG.16: 2 residues within 4Å: Chain D: N.144, T.146 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.144, D:T.146 NAG.17: 5 residues within 4Å: Chain D: G.411, E.413, N.567, T.569, S.577 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:E.413 Hydrogen bonds: D:N.567, D:S.577 NAG.18: 4 residues within 4Å: Chain D: F.470, P.472, N.535, M.572 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:F.470

3 x CU: COPPER (II) ION(Non-covalent)

CU.7: 4 residues within 4Å: Chain A: H.32, H.51 Chain D: H.46, H.65 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Metal complexes: D:H.46, D:H.65, A:H.32, A:H.51 CU.8: 2 residues within 4Å: Chain A: H.286 Chain C: H.38 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.286, C:H.38 CU.12: 2 residues within 4Å: Chain B: H.38 Chain D: H.300 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, T. et al., ELAPOR1 is A Copper-Dependent Tethering Factor Driving Proacrosomal Vesicle Fusion in Acrosome Biogenesis. To Be Published

Release Date

2025-07-23

Peptides

Endosome/lysosome-associated apoptosis and autophagy regulator 1: A
Endosome/lysosome-associated apoptosis and autophagy regulator 1: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Endosome/lysosome-associated apoptosis and autophagy regulator 1

Endosome/lysosome-associated apoptosis and autophagy regulator 1