SMTL ID : 9w1k.1

Crystal structure of Aedes aegypti Dopachrome Conversion Enzyme.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

1 x NAG- BMA- FUC: beta-D-mannopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-BMA-FUC.1: 4 residues within 4Å: Chain A: D.46, W.74, G.144, N.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.46, A:D.46

1 x NDG- BMA- FUC: beta-D-mannopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-BMA-FUC.2: 3 residues within 4Å: Chain B: D.46, W.74, N.145 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.46, B:N.145

1 x NDG- BMA- FUC: beta-D-mannopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-BMA-FUC.3: 3 residues within 4Å: Chain C: W.74, L.111, N.145 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.111 Hydrogen bonds: C:W.74

1 x NDG- BMA- BMA- BMA- ARA- FUC: beta-D-mannopyranose-(1-3)-[alpha-L-arabinopyranose-(1-6)]beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-BMA-BMA-BMA-ARA-FUC.4: 3 residues within 4Å: Chain D: D.46, W.74, N.145 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.46, D:N.145

1 x NAG- NAG- FUC- FUC: alpha-L-fucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC-FUC.5: 5 residues within 4Å: Chain A: N.285, T.287, A.288, R.291, D.297 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.291

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-BMA.6: 2 residues within 4Å: Chain B: N.285, T.287 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.287

1 x NDG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Post Translational Modification)

NDG-BMA.7: 3 residues within 4Å: Chain C: N.285, T.287, A.288 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:T.287 Hydrogen bonds: C:T.287

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.8: 5 residues within 4Å: Chain D: N.285, T.287, A.288, R.291, D.297 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.291, D:R.291, D:D.297

4 x CA: CALCIUM ION(Non-covalent)

CA.9: 3 residues within 4Å: Chain A: Q.204, D.245, D.246 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.245, H2O.1, H2O.1 CA.17: 3 residues within 4Å: Chain B: Q.204, D.245, D.246 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.245, B:D.246, H2O.1, H2O.1, H2O.1 CA.21: 3 residues within 4Å: Chain C: Q.204, D.245, D.246 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.245, H2O.1, H2O.1, H2O.1 CA.24: 3 residues within 4Å: Chain D: Q.204, D.245, D.246 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.245, D:D.246, H2O.2, H2O.2, H2O.2

18 x ACY: ACETIC ACID(Non-functional Binders)

ACY.10: 5 residues within 4Å: Chain A: R.72, R.123, W.244, F.249, Y.358 Ligand excluded by PLIP ACY.11: 5 residues within 4Å: Chain A: R.304, S.308, L.326, L.329, M.346 Ligand excluded by PLIP ACY.12: 5 residues within 4Å: Chain A: D.187, V.188, D.189, K.195, R.284 Ligand excluded by PLIP ACY.13: 5 residues within 4Å: Chain A: D.234, F.235, N.236, Q.307 Ligands: ACY.14 Ligand excluded by PLIP ACY.14: 7 residues within 4Å: Chain A: L.231, E.232, G.233, D.234, N.273, Q.309 Ligands: ACY.13 Ligand excluded by PLIP ACY.15: 3 residues within 4Å: Chain A: Q.172, E.176, R.207 Ligand excluded by PLIP ACY.16: 3 residues within 4Å: Chain A: A.243, D.245 Chain D: N.224 Ligand excluded by PLIP ACY.18: 5 residues within 4Å: Chain B: R.72, R.123, T.182, F.249, Y.358 Ligand excluded by PLIP ACY.19: 6 residues within 4Å: Chain B: D.187, V.188, D.189, K.195, F.197, R.284 Ligand excluded by PLIP ACY.20: 4 residues within 4Å: Chain B: R.304, G.305, S.308, L.326 Ligand excluded by PLIP ACY.22: 4 residues within 4Å: Chain C: M.56, R.123, F.249, Y.358 Ligand excluded by PLIP ACY.23: 3 residues within 4Å: Chain C: R.304, S.308, L.329 Ligand excluded by PLIP ACY.25: 4 residues within 4Å: Chain D: R.304, S.308, L.326, L.329 Ligand excluded by PLIP ACY.26: 3 residues within 4Å: Chain D: R.123, F.249, Y.358 Ligand excluded by PLIP ACY.27: 2 residues within 4Å: Chain D: G.144, F.146 Ligand excluded by PLIP ACY.28: 2 residues within 4Å: Chain D: P.164, R.167 Ligand excluded by PLIP ACY.29: 4 residues within 4Å: Chain A: L.222, H.223, N.224 Chain D: D.245 Ligand excluded by PLIP ACY.30: 4 residues within 4Å: Chain D: R.354, D.355, F.390, H.393 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Crystal structure of Aedes aegypti Dopachrome Conversion Enzyme. To Be Published

Release Date

2025-09-03

Peptides

Dopachrome conversion enzyme: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dopachrome conversion enzyme

Related Entries With Identical Sequence