SMTL ID : 9w6v.1 (5 other biounits)

Crystal structure of 11betaHSD1 in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.20, A.21, S.22, K.23, G.24, I.25, G.26, A.44, R.45, S.46, G.70, T.71, M.72, E.73, N.98, H.99, I.100, V.147, S.148, S.149, L.150, Y.162, K.166, L.194, G.195, L.196, I.197, T.199, T.201, A.202 Ligands: 01.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.194 Hydrogen bonds: A:S.22, A:S.22, A:K.23, A:I.25, A:R.45, A:S.46, A:T.71, A:T.71, A:M.72, A:I.100, A:V.147, A:K.166, A:K.166, A:I.197, A:I.197, A:T.199 Salt bridges: A:K.23, A:R.45 NAP.3: 34 residues within 4Å: Chain B: G.20, A.21, S.22, K.23, G.24, I.25, G.26, A.44, R.45, S.46, G.70, T.71, M.72, E.73, N.98, H.99, I.100, T.101, N.102, Y.126, V.147, S.148, S.149, L.150, Y.162, K.166, L.194, G.195, L.196, I.197, T.199, T.201, A.202 Ligands: 01.4 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:L.194 Hydrogen bonds: B:S.22, B:S.22, B:K.23, B:K.23, B:I.25, B:G.26, B:R.45, B:S.46, B:T.71, B:T.71, B:M.72, B:N.98, B:I.100, B:Y.126, B:V.147, B:Y.162, B:K.166, B:K.166, B:I.197, B:T.199, B:T.199, B:T.201 Salt bridges: B:K.23, B:R.45

2 x 01: 3-(1-adamantyl)-6,7,8,9-tetrahydro-5~{H}-[1,2,4]triazolo[4,3-a]azepine

01.2: 15 residues within 4Å: Chain A: T.103, S.149, L.150, A.151, Y.156, V.159, Y.162, G.195, L.196, A.202, A.205, V.206, V.210, M.212 Ligands: NAP.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.156, A:Y.156, A:L.196, A:V.206, A:V.210 Hydrogen bonds: A:S.149, A:Y.162 01.4: 15 residues within 4Å: Chain B: I.100, T.103, S.149, L.150, A.151, Y.156, Y.162, L.194, G.195, L.196, A.202, A.205, V.206, M.212 Ligands: NAP.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.196, B:L.196, B:A.202, B:V.206 Hydrogen bonds: B:S.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numata, Y. et al., Structure-based design, synthesis, and evaluation of tetrahydrotriazolothiazepine derivatives as novel 11 beta-hydroxysteroid dehydrogenase type 1 inhibitors. Bioorg.Med.Chem. (2025)

Release Date

2025-10-08

Peptides

11-beta-hydroxysteroid dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

11-beta-hydroxysteroid dehydrogenase 1

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