SMTL ID : 9wf6.2 (1 other biounit)

Crystal Structure of Escherichia coli GroEL with Magnesium Ions and a Phosphorylated Serine Residue-3.0 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-14-mer

Ligands

24 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 4 residues within 4Å: Chain A: V.136, P.137, Q.146, I.489 Ligand excluded by PLIP BME.2: 4 residues within 4Å: Chain A: K.28, V.29, Q.453, N.457 Ligand excluded by PLIP BME.3: 2 residues within 4Å: Chain A: N.21, D.25 Ligand excluded by PLIP BME.6: 2 residues within 4Å: Chain B: Q.146, I.489 Ligand excluded by PLIP BME.7: 5 residues within 4Å: Chain B: V.29, R.36, Q.453, N.457 Chain C: E.518 Ligand excluded by PLIP BME.9: 3 residues within 4Å: Chain C: K.132, A.133, S.135 Ligand excluded by PLIP BME.10: 6 residues within 4Å: Chain C: V.29, R.36, Q.453, L.456, N.457 Chain D: E.518 Ligand excluded by PLIP BME.11: 3 residues within 4Å: Chain C: R.445, E.448, R.452 Ligand excluded by PLIP BME.13: 5 residues within 4Å: Chain D: P.137, C.138, A.143, Q.146, V.147 Ligand excluded by PLIP BME.14: 3 residues within 4Å: Chain D: R.445, E.448, R.452 Ligand excluded by PLIP BME.17: 5 residues within 4Å: Chain E: V.29, R.36, Q.453, N.457 Chain F: E.518 Ligand excluded by PLIP BME.21: 3 residues within 4Å: Chain F: P.137, Q.146, I.489 Ligand excluded by PLIP BME.22: 3 residues within 4Å: Chain A: E.518 Chain F: R.36, N.457 Ligand excluded by PLIP BME.23: 5 residues within 4Å: Chain F: S.424, K.425, K.470, G.472, D.473 Ligand excluded by PLIP BME.26: 4 residues within 4Å: Chain G: K.132, A.133, S.135, P.137 Ligand excluded by PLIP BME.32: 5 residues within 4Å: Chain I: V.29, R.36, Q.453, N.457 Chain J: E.518 Ligand excluded by PLIP BME.33: 3 residues within 4Å: Chain I: E.102, K.441, R.445 Ligand excluded by PLIP BME.35: 1 residues within 4Å: Chain J: N.457 Ligand excluded by PLIP BME.37: 4 residues within 4Å: Chain K: R.36, Q.453, N.457 Chain L: E.518 Ligand excluded by PLIP BME.39: 4 residues within 4Å: Chain L: V.29, R.36, N.457 Chain M: E.518 Ligand excluded by PLIP BME.41: 2 residues within 4Å: Chain M: L.456, N.457 Ligand excluded by PLIP BME.44: 4 residues within 4Å: Chain N: V.189, E.191, A.373, G.374 Ligand excluded by PLIP BME.45: 4 residues within 4Å: Chain N: K.132, A.133, S.135, P.137 Ligand excluded by PLIP BME.46: 5 residues within 4Å: Chain E: E.518 Chain N: V.29, R.36, Q.453, N.457 Ligand excluded by PLIP

21 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.4: 5 residues within 4Å: Chain A: R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.5: 5 residues within 4Å: Chain A: N.82, D.83, T.210, N.326, H.401 Ligand excluded by PLIP HEZ.8: 5 residues within 4Å: Chain B: R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.12: 6 residues within 4Å: Chain C: A.84, R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.15: 6 residues within 4Å: Chain D: A.84, R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.16: 9 residues within 4Å: Chain D: D.83, A.84, A.85, G.86, H.401, R.404, A.405, E.408, K.498 Ligand excluded by PLIP HEZ.18: 3 residues within 4Å: Chain E: R.501, Q.505, Y.506 Ligand excluded by PLIP HEZ.19: 6 residues within 4Å: Chain E: P.137, C.138, A.143, Q.146, I.150, I.489 Ligand excluded by PLIP HEZ.24: 5 residues within 4Å: Chain F: R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.27: 5 residues within 4Å: Chain G: A.84, R.501, S.502, Q.505, Y.506 Ligand excluded by PLIP HEZ.28: 3 residues within 4Å: Chain G: G.459, E.460 Chain H: G.110 Ligand excluded by PLIP HEZ.30: 6 residues within 4Å: Chain H: A.84, K.498, R.501, S.502, Q.505, Y.506 Ligand excluded by PLIP HEZ.31: 6 residues within 4Å: Chain H: A.143, Q.146, I.150, I.489, D.490, L.494 Ligand excluded by PLIP HEZ.34: 5 residues within 4Å: Chain I: R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.36: 5 residues within 4Å: Chain J: R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.38: 5 residues within 4Å: Chain K: A.84, R.501, S.502, Q.505, Y.506 Ligand excluded by PLIP HEZ.40: 6 residues within 4Å: Chain L: A.84, R.501, S.502, Q.505, Y.506, S.509 Ligand excluded by PLIP HEZ.42: 5 residues within 4Å: Chain M: A.84, R.501, S.502, Q.505, Y.506 Ligand excluded by PLIP HEZ.47: 5 residues within 4Å: Chain N: K.498, R.501, S.502, Q.505, Y.506 Ligand excluded by PLIP HEZ.48: 7 residues within 4Å: Chain N: P.137, C.138, A.143, Q.146, I.150, I.489, D.490 Ligand excluded by PLIP HEZ.49: 7 residues within 4Å: Chain N: N.82, D.83, A.84, A.85, G.86, N.326, H.401 Ligand excluded by PLIP

5 x MG: MAGNESIUM ION(Non-covalent)

MG.20: 2 residues within 4Å: Chain E: G.86, D.398 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:G.86, E:D.398, H2O.2, H2O.2 MG.25: 2 residues within 4Å: Chain F: G.86, D.398 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:G.86, F:D.398, H2O.2, H2O.2 MG.29: 2 residues within 4Å: Chain G: G.86, D.398 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:G.86, G:D.398, H2O.2, H2O.2 MG.43: 3 residues within 4Å: Chain M: G.86, D.87, D.398 5 PLIP interactions: 2 interactions with chain M, 3 Ligand-Water interactions Metal complexes: M:G.86, M:D.398, H2O.3, H2O.3, H2O.3 MG.50: 2 residues within 4Å: Chain N: G.86, D.398 4 PLIP interactions: 2 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:G.86, N:D.398, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Crystal Structure of Escherichia coli GroEL with Magnesium Ions and a Phosphorylated Serine Residue. To Be Published

Release Date

2025-09-03

Peptides

Chaperonin GroEL: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
P

C
Q

D
R

E
T

F
U

G
V

H
W

I
X

J
Y

K
Z

L
a

M
b

N
c

Chaperonin GroEL

Related Entries With Identical Sequence