SMTL ID : 9x55.1

Crystal structure of RhoGDI2 in complex with Compound 3054a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x 01: (3~{S})-~{N}-[(~{R})-(4-phenylphenyl)-thiophen-2-yl-methyl]piperidine-3-carboxamide

01.1: 11 residues within 4Å: Chain A: Y.47, Q.67, T.69, V.74, D.77, E.101, P.103, Y.112, N.114, W.131, L.133 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.47, A:D.77, A:Y.112, A:W.131, A:L.133 Hydrogen bonds: A:D.77, A:D.77 Water bridges: A:E.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., Fragment-Based Discovery of a Small-Molecule RhoGDI2 Ligand, HR3119, that Inhibits Cancer Cell Migration. Acs Chem.Biol. (2025)

Release Date

2025-10-29

Peptides

Rho GDP-dissociation inhibitor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rho GDP-dissociation inhibitor 2

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