SMTL ID : 9x56.1

Crystal structure of RhoGDI2 in complex with Compound 2542

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.47, E.100, E.101, A.102, P.103 Ligands: 01.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.100, A:E.100

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.15, K.50, E.94, L.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.50

1 x 01: (~{R})-[4-(2-fluorophenyl)phenyl]-(1,3-thiazol-2-yl)methanamine

01.3: 14 residues within 4Å: Chain A: Y.47, Q.67, T.69, R.71, V.74, K.75, D.77, A.102, P.103, Y.112, N.114, W.131, L.133 Ligands: GOL.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.47, A:T.69, A:P.103, A:Y.112, A:Y.112, A:W.131 Hydrogen bonds: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., Fragment-Based Discovery of a Small-Molecule RhoGDI2 Ligand, HR3119, that Inhibits Cancer Cell Migration. Acs Chem.Biol. (2025)

Release Date

2025-10-29

Peptides

Rho GDP-dissociation inhibitor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rho GDP-dissociation inhibitor 2

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