SMTL ID : 9y0k.1

Structure of Plasmodium falciparum 20S proteasome with bound J80

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x 01: N,N-diethyl-N~2~-hexanoyl-D-asparaginyl-N-{(1S)-2-(2,4-difluorophenyl)-1-[(2S,3S,5S,6S)-5-formyl-2-hydroxy-3-(hydroxymethyl)-3,6-dimethylmorpholin-2-yl]ethyl}-4-fluoro-L-phenylalaninamide

01.1: 24 residues within 4Å: Chain L: T.1, D.16, R.18, A.19, S.20, M.21, S.26, V.30, K.32, M.44, A.45, G.46, A.48, C.51, C.95, G.128, S.129, G.130, G.168, S.169 Chain M: N.151, D.153, V.155, S.157 17 PLIP interactions: 14 interactions with chain L, 3 interactions with chain M Hydrophobic interactions: L:A.19, L:V.30, L:A.45, L:A.48, M:N.151, M:D.153, M:V.155 Hydrogen bonds: L:S.20, L:S.20, L:S.26, L:K.32, L:G.46, L:G.46, L:G.46, L:A.48, L:S.129, L:G.130 01.2: 24 residues within 4Å: Chain 0: N.151, D.153, V.155, S.157 Chain Z: T.1, D.16, R.18, A.19, S.20, M.21, S.26, V.30, K.32, M.44, A.45, G.46, A.48, C.51, C.95, G.128, S.129, G.130, G.168, S.169 17 PLIP interactions: 14 interactions with chain Z, 3 interactions with chain 0 Hydrophobic interactions: Z:A.19, Z:V.30, Z:A.45, Z:A.48, 0:N.151, 0:D.153, 0:V.155 Hydrogen bonds: Z:S.20, Z:S.20, Z:S.26, Z:K.32, Z:G.46, Z:G.46, Z:G.46, Z:A.48, Z:S.129, Z:G.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structure of Plasmodium falciparum 20S proteasome with bound J80. To Be Published

Release Date

2025-10-29

Peptides

Proteasome subunit alpha type-6: AO
Proteasome subunit alpha type-2: BP
Proteasome subunit alpha type-3: CQ
Proteasome subunit alpha type-4: DR
Proteasome subunit alpha type-5: ES
Proteasome subunit alpha type-1: FT
Proteasome subunit alpha type-3: GU
Proteasome endopeptidase complex: HV
Proteasome subunit beta-2: IW
Proteasome subunit beta-3: JX
Proteasome subunit beta-4: KY
Proteasome subunit beta: LZ
Proteasome subunit beta: M0
Proteasome subunit beta: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

Proteasome subunit alpha type-6

Proteasome subunit alpha type-2

Proteasome subunit alpha type-3

Proteasome subunit alpha type-4

Proteasome subunit alpha type-5

Proteasome subunit alpha type-1

Proteasome subunit alpha type-3

Proteasome endopeptidase complex

Proteasome subunit beta-2

Proteasome subunit beta-3

Proteasome subunit beta-4

Proteasome subunit beta

Proteasome subunit beta

Proteasome subunit beta

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