SMTL ID : 9yb6.1

Human Mitochondrial Aspartate Aminotransferase complex with PLP at 1.5 Angstrom.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.162, N.215, F.381, R.407 Chain B: R.313 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.313, A:R.407 Water bridges: A:R.407 GOL.2: 6 residues within 4Å: Chain A: K.58, K.59, M.60, S.416, N.417, Y.420 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.59 Water bridges: A:N.417, A:N.417 GOL.3: 7 residues within 4Å: Chain A: Y.96, R.313, S.317, N.318 Chain B: W.162, K.279, R.287 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.313, A:S.317, A:S.317, A:N.318, B:W.162, B:R.287 GOL.4: 6 residues within 4Å: Chain A: F.151, Q.204, N.237 Chain B: S.30, S.31, W.32 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:D.28, B:W.32, A:Q.204 Hydrogen bonds: A:Q.204, A:N.237 GOL.6: 5 residues within 4Å: Chain B: K.58, M.60, S.416, N.417, Y.420 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.58

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: S.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.57 Salt bridges: A:K.58 SO4.7: 2 residues within 4Å: Chain B: H.369, N.370 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.370 Salt bridges: B:H.369

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain B: K.52, R.53, D.54, T.55 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krinkel, B.A. et al., Human mitochondrial GOT2 crystal structure and. To Be Published

Release Date

2025-09-24

Peptides

Aspartate aminotransferase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate aminotransferase, mitochondrial