SMTL ID : 9yfr.1

perdeuterated human DJ-1, 100K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.92 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: G.68, P.69, Y.70, V.73, I.94, E.97, Q.98, R.101 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.70, A:Y.70, A:E.97 EDO.2: 5 residues within 4Å: Chain A: K.125, E.150, K.151, D.152, G.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.150, A:D.152 Water bridges: A:G.153 EDO.3: 8 residues within 4Å: Chain B: G.68, P.69, Y.70, V.73, I.94, E.97, Q.98, R.101 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.70, B:Y.70, B:E.97 EDO.4: 5 residues within 4Å: Chain B: K.125, E.150, K.151, D.152, G.153 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.150, B:D.152 Water bridges: B:G.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J. et al., Environmental contributions to proton sharing in protein low barrier hydrogen bonds. To Be Published

Release Date

2025-10-08

Peptides

Protein deglycase DJ-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein deglycase DJ-1

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