TBvar3D

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Custom Structure Database of the Antibiotic Resistance Catalog in Mycobacterium tuberculosis from the WHO

Overview of the Structure used to cover the targets in the WHO mutation catalog. A variant causing resistance against a specific drug on a specfiic protein describes a drug-target pair. Every row in the table below corresponds to a drug-target pair and describes how the structure situation of the drug-target pair was resolved. It describes if the antibiotic is known to be interacting with the corresponding pair and how it was ensured that the drug of interest is present in the structure. The annotation of the necessity of the presence of a drug was performed in a conservative way, which means that still controversial interactions between drugs and targets were annotated as "no drug needed".

UniProtKB
AC
GeneLengthPubChemIDDrug NameDrug GroupNeeds
Drug
Method
Structure
Method
Ligand
Oligomeric
State
PDB
ID
Exp.
PDB ID
Hom.
PDB Chain IDPDB ID TransPDB Ligand ID TransPDB Ligand IDUniPROTKB AC HeteromersPubChemID: activated formMechanism
P9WIE5katG7403767Isoniazidungrouped1ExpTranshomo-2-mer1sj2AB6cdqNIZNIZabrogated_prodrug_activation
P9WH87rplC217441401Linezolidungrouped1ExpSupribosomal protein5v7qJ5v7q917UNKdrug_target_alteration
P9WH67rpsJ101441401Linezolidungrouped1Expribosomal protein5v93eunclear
P9WN03aftA64314052Ethambutolungrouped0AF2monomerAunclear
P9WP79fbiB4486480466Delamanidungrouped1Exphomo-2-mer4xoqABabrogated_prodrug_activation
P9WNL9embA109414052Ethambutolungrouped1ExpExphetero-1-1-1-mer7bvfB95EP9WNL5, P9WNL7drug_target_alteration
P9WIQ1glf39914052Ethambutolungrouped1Exphomo-2-mer4rpjABunclear
O05882Rv3237c1601046Pyrazinamideungrouped1AF2monomerAunclear
P9WGJ9embR38814052Ethambutolungrouped0Expmonomer2fezAgene_regulation
P9WFK7eis40237768Amikacinaminoglycoside0Exphomo-6-mer3uy5ABCDEFabrogation_of_drug_inactivating_enzyme
P9WFK7eis4026032Kanamycinaminoglycoside0Exphomo-6-mer3uy5ABCDEFabrogation_of_drug_inactivating_enzyme
P9WJX9tap4193767Isoniazidungrouped0AF2monomerAdrug_efflux
P9WJX9tap41919649Streptomycinaminoglycoside0AF2monomerAdrug_efflux
P9WJX9tap4191046Pyrazinamideungrouped0AF2monomerAdrug_efflux
P9WFR5Rv3806c30237768Amikacinaminoglycoside0AF2monomerAunclear
P9WFR5Rv3806c3023000502Capreomycinungrouped0AF2monomerAunclear
P9WFR5Rv3806c30214052Ethambutolungrouped0AF2monomerAunclear
P9WKW7Rv378816114052Ethambutolungrouped0AF2monomerAunclear
P9WQB7ahpC1953767Isoniazidungrouped0Exphomo-12-mer7bz6ABCDEFGHIJKLunclear
P9WGY9rpoB1178135398735Rifampicinrifamycin1ExpExphetero-2-1-1-1-1-mer5uhcCRFPP9WGZ1, P9WGZ1, P9WGY7, P9WGY5drug_target_alteration
P9WGT3mabA2473767Isoniazidungrouped0Exphomo-4-mer1uznABCDunclear
P9WGT3mabA2472761171Ethionamideungrouped0Exphomo-4-mer1uznABCDunclear
P9WG45gyrB675152946Moxifloxacinfluoroquinolone1AF2Transhetero-2-2-mer5bs8BD5bs8MFXMFXP9WG47drug_target_alteration
P9WG45gyrB675149096Levofloxacinfluoroquinolone1AF2Transhetero-2-2-mer5btgBD5btgLFXLFXP9WG47drug_target_alteration
P9WQM5Rv1979c4812794Clofazimineungrouped0AF2monomerAdrug_efflux
P9WQM5Rv1979c4815388906Bedaquilineungrouped0AF2monomerAdrug_efflux
P9WF37whiB611637768Amikacinaminoglycoside0AF2monomerAgene_regulation
P9WF37whiB61163000502Capreomycinungrouped0AF2monomerAgene_regulation
P9WF37whiB611619649Streptomycinaminoglycoside0AF2monomerAgene_regulation
O53789Rv068119619649Streptomycinaminoglycoside0AF2homo-2-merABgene_regulation
I6XD65pncA1861046Pyrazinamideungrouped1ExpDockmonomer3pl1APZAabrogated_prodrug_activation
P9WNE1fgd13366480466Delamanidungrouped1Exphomo-2-mer3c8nABabrogated_prodrug_activation
P9WN87furA1473767Isoniazidungrouped0AF2homo-2-merABgene_regulation
P9WIN9mpt642282794Clofazimineungrouped0Expmonomer2hhiAunclear
P9WIN9mpt642285388906Bedaquilineungrouped0Expmonomer2hhiAunclear
P9WIQ3fprA45637768Amikacinaminoglycoside1Exphomo-2-mer2c7gABunclear
P9WIQ3fprA4563000502Capreomycinungrouped1Exphomo-2-mer2c7gABunclear
P9WNF7mymA4952761171Ethionamideungrouped0AF2monomerAunclear
P9WIL3panD1391046Pyrazinamideungrouped1ExpExphetero-4-4-mer6oyyABCDEFGHVGL1047drug_target_alteration
Q79FI8PPE359871046Pyrazinamideungrouped1AF2monomerAunclear
P9WGR1inhA2693767Isoniazidungrouped1ExpExphomo-4-mer4troABCDZID5289618drug_target_alteration
P9WGR1inhA2692761171Ethionamideungrouped1ExpExphomo-4-mer2ntjABCDP1H49867455drug_target_alteration
P9WNL5embC109414052Ethambutolungrouped1AF2Transhomo-2-merA7bvf95E95EP9WNL5, P9WNL7drug_target_alteration
P9WH35rpsD201135398735Rifampicinrifamycin1Expribosomal protein5v937unclear
P9WP83fbiD2146480466Delamanidungrouped1Expmonomer6bwgAunclear
O33194Rv16923533000502Capreomycinungrouped1Exphomo-2-mer4i9gABunclear
P9WGW9rsmG22419649Streptomycinaminoglycoside0Expmonomer7cfeAabrogation_of_drug_target_methylation
P95160ndh4633767Isoniazidungrouped1AF2homo-2-merABoverabundance_of_drug_target_substrate
P95160ndh4632761171Ethionamideungrouped1AF2homo-2-merABoverabundance_of_drug_target_substrate
P9WGZ1rpoA347135398735Rifampicinrifamycin1ExpExphetero-2-1-1-1-1-mer5uhcABRFPP9WGY9, P9WGY7, P9WGY5unclear
P9WP81fbiA3316480466Delamanidungrouped1AF2monomerAunclear
P9WNF9ethA4892761171Ethionamideungrouped1AF2DockmonomerAUNLabrogated_prodrug_activation
P9WMS9Rv378912114052Ethambutolungrouped0AF2monomerAunclear
P9WHG1prfB37137768Amikacinaminoglycoside0AF2monomerAunclear
P9WHG1prfB3713000502Capreomycinungrouped0AF2monomerAunclear
P9WGZ9rnj558135398735Rifampicinrifamycin0AF2homo-4-merABCDunclear
P9WGZ9rnj5583767Isoniazidungrouped0AF2homo-4-merABCDunclear
P9WP15ddn1516480466Delamanidungrouped1AF2DockmonomerAUNLabrogated_prodrug_activation
P9WP77fbiC8566480466Delamanidungrouped1AF2monomerAabrogated_prodrug_activation
P9WNL7embB109814052Ethambutolungrouped1ExpExphetero-1-1-1-mer7bvfA95EP9WNL5, P9WNL9drug_target_alteration
P9WJM1murA418441401Linezolidungrouped0AF2homo-4-merABCDunclear
P9WJM1murA4183000502Capreomycinungrouped0AF2homo-4-merABCDunclear
P9WJM1murA41819649Streptomycinaminoglycoside0AF2homo-4-merABCDunclear
P9WJM1murA41837768Amikacinaminoglycoside0AF2homo-4-merABCDunclear
P9WJM1murA4186032Kanamycinaminoglycoside0AF2homo-4-merABCDunclear
L7N665Rv3236c3851046Pyrazinamideungrouped0AF2homo-2-merABdrug_efflux
Q6MX01whiB79237768Amikacinaminoglycoside0Exphetero-2-1-1-1-1-1-1-1-mer7kimKunclear
Q6MX01whiB7926032Kanamycinaminoglycoside0Exphetero-2-1-1-1-1-1-1-1-mer7kimKgene_regulation
Q6MX01whiB79219649Streptomycinaminoglycoside0Exphetero-2-1-1-1-1-1-1-1-mer7kimKgene_regulation
O53582aftB62737768Amikacinaminoglycoside0AF2monomerAunclear
O53582aftB6273000502Capreomycinungrouped0AF2monomerAunclear
O53487Rv2044c1051046Pyrazinamideungrouped0AF2monomerAunclear
O06393ccsA32437768Amikacinaminoglycoside0AF2monomerAunclear
O06393ccsA3243000502Capreomycinungrouped0AF2monomerAunclear
P9WGY7rpoC1316135398735Rifampicinrifamycin1ExpExphetero-2-1-1-1-1-mer5uhcDRFPP9WGZ1, P9WGZ1, P9WGY9, P9WGY5unclear
P9WMY7mshA4803767Isoniazidungrouped1AF2homo-2-merABabrogated_prodrug_activation
P9WMY7mshA4802761171Ethionamideungrouped1AF2homo-2-merABabrogated_prodrug_activation
P9WJV1mmpL59642794Clofazimineungrouped0AF2monomerAdrug_efflux
P9WJV1mmpL59645388906Bedaquilineungrouped0AF2monomerAdrug_efflux
P9WJS7mmpS51422794Clofazimineungrouped0AF2monomerAdrug_efflux
P9WJS7mmpS51425388906Bedaquilineungrouped0AF2monomerAdrug_efflux
I6Y8F7mmpR51652794Clofazimineungrouped0Exphomo-4-mer4nb5ABCDgene_regulation
I6Y8F7mmpR51655388906Bedaquilineungrouped0Exphomo-4-mer4nb5ABCDgene_regulation
P9WJ63tlyA2683000502Capreomycinungrouped0AF2monomerAabrogation_of_drug_target_methylation
O06394Rv052852937768Amikacinaminoglycoside0AF2monomerAunclear
O06394Rv05285293000502Capreomycinungrouped0AF2monomerAunclear
P9WG47gyrA838152946Moxifloxacinfluoroquinolone1AF2Transhetero-2-2-mer5bs8AC5bs8MFXMFXP9WG45drug_target_alteration
P9WG47gyrA838149096Levofloxacinfluoroquinolone1AF2Transhetero-2-2-mer5btgAC5btgLFXLFXP9WG45drug_target_alteration
P9WMC1ethR2162761171Ethionamideungrouped0Exphomo-2-mer5mymABgene_regulation
P9WPV7atpB2505388906Bedaquilineungrouped1HomTranshetero-3-3-1-1-1-1-1-9-mer7jgaI7jgaBQ1BQ1P9WPU7, P9WPU5, P9WPV3, P9WPV5, P9WPV1, P9WPU9, P9WPS1 drug_target_alteration
P9WPC9clpC18481046Pyrazinamideungrouped1Homhomo-6-mer5og1.1ABCDEFunclear
P9WKV1Rv04854383767Isoniazidungrouped0AF2homo-2-merABgene_regulation
P9WKV1Rv04854382761171Ethionamideungrouped0AF2homo-2-merABgene_regulation
P9WPS1atpE815388906Bedaquilineungrouped1HomTranshetero-3-3-1-1-1-1-1-9-mer7jgaLMNOPQRST7jgaBQ1BQ1P9WPU7, P9WPU5, P9WPV3, P9WPV5, P9WPV1, P9WPU9, P9WPV7drug_target_alteration
P9WH63rpsL12419649Streptomycinaminoglycoside1Expribosomal protein5v93funclear
I6YDN6pepQ3722794Clofazimineungrouped0AF2homo-2-merABunclear
I6YDN6pepQ3725388906Bedaquilineungrouped0AF2homo-2-merABunclear
O33195Rv1693583000502Capreomycinungrouped0AF2monomerAunclear
P9WH63rpsL12419649Streptomycinaminoglycoside1Expribosomal protein5v93funclear
I6YDN6pepQ3722794Clofazimineungrouped0AF2homo-2-merABunclear
I6YDN6pepQ3725388906Bedaquilineungrouped0AF2homo-2-merABunclear
O33195Rv1693583000502Capreomycinungrouped0AF2monomerAunclear