Custom Structure Database of the Antibiotic Resistance Catalog in Mycobacterium tuberculosis from the WHO
Overview of the Structure used to cover the targets in the WHO mutation catalog. A variant causing resistance against a specific drug on a specfiic protein describes a drug-target pair. Every row in the table below corresponds to a drug-target pair and describes how the structure situation of the drug-target pair was resolved. It describes if the antibiotic is known to be interacting with the corresponding pair and how it was ensured that the drug of interest is present in the structure. The annotation of the necessity of the presence of a drug was performed in a conservative way, which means that still controversial interactions between drugs and targets were annotated as "no drug needed".
UniProtKB AC | Gene | Length | PubChemID | Drug Name | Drug Group | Needs Drug | Method Structure | Method Ligand | Oligomeric State | PDB ID Exp. | PDB ID Hom. | PDB Chain ID | PDB ID Trans | PDB Ligand ID Trans | PDB Ligand ID | UniPROTKB AC Heteromers | PubChemID: activated form | Mechanism |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P9WIE5 | katG | 740 | 3767 | Isoniazid | ungrouped | 1 | Exp | Trans | homo-2-mer | 1sj2 | AB | 6cdq | NIZ | NIZ | abrogated_prodrug_activation | |||
P9WH87 | rplC | 217 | 441401 | Linezolid | ungrouped | 1 | Exp | Sup | ribosomal protein | 5v7q | J | 5v7q | 917 | UNK | drug_target_alteration | |||
P9WH67 | rpsJ | 101 | 441401 | Linezolid | ungrouped | 1 | Exp | ribosomal protein | 5v93 | e | unclear | |||||||
P9WN03 | aftA | 643 | 14052 | Ethambutol | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WP79 | fbiB | 448 | 6480466 | Delamanid | ungrouped | 1 | Exp | homo-2-mer | 4xoq | AB | abrogated_prodrug_activation | |||||||
P9WNL9 | embA | 1094 | 14052 | Ethambutol | ungrouped | 1 | Exp | Exp | hetero-1-1-1-mer | 7bvf | B | 95E | P9WNL5, P9WNL7 | drug_target_alteration | ||||
P9WIQ1 | glf | 399 | 14052 | Ethambutol | ungrouped | 1 | Exp | homo-2-mer | 4rpj | AB | unclear | |||||||
O05882 | Rv3237c | 160 | 1046 | Pyrazinamide | ungrouped | 1 | AF2 | monomer | A | unclear | ||||||||
P9WGJ9 | embR | 388 | 14052 | Ethambutol | ungrouped | 0 | Exp | monomer | 2fez | A | gene_regulation | |||||||
P9WFK7 | eis | 402 | 37768 | Amikacin | aminoglycoside | 0 | Exp | homo-6-mer | 3uy5 | ABCDEF | abrogation_of_drug_inactivating_enzyme | |||||||
P9WFK7 | eis | 402 | 6032 | Kanamycin | aminoglycoside | 0 | Exp | homo-6-mer | 3uy5 | ABCDEF | abrogation_of_drug_inactivating_enzyme | |||||||
P9WJX9 | tap | 419 | 3767 | Isoniazid | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WJX9 | tap | 419 | 19649 | Streptomycin | aminoglycoside | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WJX9 | tap | 419 | 1046 | Pyrazinamide | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WFR5 | Rv3806c | 302 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | unclear | ||||||||
P9WFR5 | Rv3806c | 302 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WFR5 | Rv3806c | 302 | 14052 | Ethambutol | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WKW7 | Rv3788 | 161 | 14052 | Ethambutol | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WQB7 | ahpC | 195 | 3767 | Isoniazid | ungrouped | 0 | Exp | homo-12-mer | 7bz6 | ABCDEFGHIJKL | unclear | |||||||
P9WGY9 | rpoB | 1178 | 135398735 | Rifampicin | rifamycin | 1 | Exp | Exp | hetero-2-1-1-1-1-mer | 5uhc | C | RFP | P9WGZ1, P9WGZ1, P9WGY7, P9WGY5 | drug_target_alteration | ||||
P9WGT3 | mabA | 247 | 3767 | Isoniazid | ungrouped | 0 | Exp | homo-4-mer | 1uzn | ABCD | unclear | |||||||
P9WGT3 | mabA | 247 | 2761171 | Ethionamide | ungrouped | 0 | Exp | homo-4-mer | 1uzn | ABCD | unclear | |||||||
P9WG45 | gyrB | 675 | 152946 | Moxifloxacin | fluoroquinolone | 1 | AF2 | Trans | hetero-2-2-mer | 5bs8 | BD | 5bs8 | MFX | MFX | P9WG47 | drug_target_alteration | ||
P9WG45 | gyrB | 675 | 149096 | Levofloxacin | fluoroquinolone | 1 | AF2 | Trans | hetero-2-2-mer | 5btg | BD | 5btg | LFX | LFX | P9WG47 | drug_target_alteration | ||
P9WQM5 | Rv1979c | 481 | 2794 | Clofazimine | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WQM5 | Rv1979c | 481 | 5388906 | Bedaquiline | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WF37 | whiB6 | 116 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | gene_regulation | ||||||||
P9WF37 | whiB6 | 116 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | gene_regulation | ||||||||
P9WF37 | whiB6 | 116 | 19649 | Streptomycin | aminoglycoside | 0 | AF2 | monomer | A | gene_regulation | ||||||||
O53789 | Rv0681 | 196 | 19649 | Streptomycin | aminoglycoside | 0 | AF2 | homo-2-mer | AB | gene_regulation | ||||||||
I6XD65 | pncA | 186 | 1046 | Pyrazinamide | ungrouped | 1 | Exp | Dock | monomer | 3pl1 | A | PZA | abrogated_prodrug_activation | |||||
P9WNE1 | fgd1 | 336 | 6480466 | Delamanid | ungrouped | 1 | Exp | homo-2-mer | 3c8n | AB | abrogated_prodrug_activation | |||||||
P9WN87 | furA | 147 | 3767 | Isoniazid | ungrouped | 0 | AF2 | homo-2-mer | AB | gene_regulation | ||||||||
P9WIN9 | mpt64 | 228 | 2794 | Clofazimine | ungrouped | 0 | Exp | monomer | 2hhi | A | unclear | |||||||
P9WIN9 | mpt64 | 228 | 5388906 | Bedaquiline | ungrouped | 0 | Exp | monomer | 2hhi | A | unclear | |||||||
P9WIQ3 | fprA | 456 | 37768 | Amikacin | aminoglycoside | 1 | Exp | homo-2-mer | 2c7g | AB | unclear | |||||||
P9WIQ3 | fprA | 456 | 3000502 | Capreomycin | ungrouped | 1 | Exp | homo-2-mer | 2c7g | AB | unclear | |||||||
P9WNF7 | mymA | 495 | 2761171 | Ethionamide | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WIL3 | panD | 139 | 1046 | Pyrazinamide | ungrouped | 1 | Exp | Exp | hetero-4-4-mer | 6oyy | ABCDEFGH | VGL | 1047 | drug_target_alteration | ||||
Q79FI8 | PPE35 | 987 | 1046 | Pyrazinamide | ungrouped | 1 | AF2 | monomer | A | unclear | ||||||||
P9WGR1 | inhA | 269 | 3767 | Isoniazid | ungrouped | 1 | Exp | Exp | homo-4-mer | 4tro | ABCD | ZID | 5289618 | drug_target_alteration | ||||
P9WGR1 | inhA | 269 | 2761171 | Ethionamide | ungrouped | 1 | Exp | Exp | homo-4-mer | 2ntj | ABCD | P1H | 49867455 | drug_target_alteration | ||||
P9WNL5 | embC | 1094 | 14052 | Ethambutol | ungrouped | 1 | AF2 | Trans | homo-2-mer | A | 7bvf | 95E | 95E | P9WNL5, P9WNL7 | drug_target_alteration | |||
P9WH35 | rpsD | 201 | 135398735 | Rifampicin | rifamycin | 1 | Exp | ribosomal protein | 5v93 | 7 | unclear | |||||||
P9WP83 | fbiD | 214 | 6480466 | Delamanid | ungrouped | 1 | Exp | monomer | 6bwg | A | unclear | |||||||
O33194 | Rv1692 | 353 | 3000502 | Capreomycin | ungrouped | 1 | Exp | homo-2-mer | 4i9g | AB | unclear | |||||||
P9WGW9 | rsmG | 224 | 19649 | Streptomycin | aminoglycoside | 0 | Exp | monomer | 7cfe | A | abrogation_of_drug_target_methylation | |||||||
P95160 | ndh | 463 | 3767 | Isoniazid | ungrouped | 1 | AF2 | homo-2-mer | AB | overabundance_of_drug_target_substrate | ||||||||
P95160 | ndh | 463 | 2761171 | Ethionamide | ungrouped | 1 | AF2 | homo-2-mer | AB | overabundance_of_drug_target_substrate | ||||||||
P9WGZ1 | rpoA | 347 | 135398735 | Rifampicin | rifamycin | 1 | Exp | Exp | hetero-2-1-1-1-1-mer | 5uhc | AB | RFP | P9WGY9, P9WGY7, P9WGY5 | unclear | ||||
P9WP81 | fbiA | 331 | 6480466 | Delamanid | ungrouped | 1 | AF2 | monomer | A | unclear | ||||||||
P9WNF9 | ethA | 489 | 2761171 | Ethionamide | ungrouped | 1 | AF2 | Dock | monomer | A | UNL | abrogated_prodrug_activation | ||||||
P9WMS9 | Rv3789 | 121 | 14052 | Ethambutol | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WHG1 | prfB | 371 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | unclear | ||||||||
P9WHG1 | prfB | 371 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WGZ9 | rnj | 558 | 135398735 | Rifampicin | rifamycin | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WGZ9 | rnj | 558 | 3767 | Isoniazid | ungrouped | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WP15 | ddn | 151 | 6480466 | Delamanid | ungrouped | 1 | AF2 | Dock | monomer | A | UNL | abrogated_prodrug_activation | ||||||
P9WP77 | fbiC | 856 | 6480466 | Delamanid | ungrouped | 1 | AF2 | monomer | A | abrogated_prodrug_activation | ||||||||
P9WNL7 | embB | 1098 | 14052 | Ethambutol | ungrouped | 1 | Exp | Exp | hetero-1-1-1-mer | 7bvf | A | 95E | P9WNL5, P9WNL9 | drug_target_alteration | ||||
P9WJM1 | murA | 418 | 441401 | Linezolid | ungrouped | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WJM1 | murA | 418 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WJM1 | murA | 418 | 19649 | Streptomycin | aminoglycoside | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WJM1 | murA | 418 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
P9WJM1 | murA | 418 | 6032 | Kanamycin | aminoglycoside | 0 | AF2 | homo-4-mer | ABCD | unclear | ||||||||
L7N665 | Rv3236c | 385 | 1046 | Pyrazinamide | ungrouped | 0 | AF2 | homo-2-mer | AB | drug_efflux | ||||||||
Q6MX01 | whiB7 | 92 | 37768 | Amikacin | aminoglycoside | 0 | Exp | hetero-2-1-1-1-1-1-1-1-mer | 7kim | K | unclear | |||||||
Q6MX01 | whiB7 | 92 | 6032 | Kanamycin | aminoglycoside | 0 | Exp | hetero-2-1-1-1-1-1-1-1-mer | 7kim | K | gene_regulation | |||||||
Q6MX01 | whiB7 | 92 | 19649 | Streptomycin | aminoglycoside | 0 | Exp | hetero-2-1-1-1-1-1-1-1-mer | 7kim | K | gene_regulation | |||||||
O53582 | aftB | 627 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | unclear | ||||||||
O53582 | aftB | 627 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
O53487 | Rv2044c | 105 | 1046 | Pyrazinamide | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
O06393 | ccsA | 324 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | unclear | ||||||||
O06393 | ccsA | 324 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WGY7 | rpoC | 1316 | 135398735 | Rifampicin | rifamycin | 1 | Exp | Exp | hetero-2-1-1-1-1-mer | 5uhc | D | RFP | P9WGZ1, P9WGZ1, P9WGY9, P9WGY5 | unclear | ||||
P9WMY7 | mshA | 480 | 3767 | Isoniazid | ungrouped | 1 | AF2 | homo-2-mer | AB | abrogated_prodrug_activation | ||||||||
P9WMY7 | mshA | 480 | 2761171 | Ethionamide | ungrouped | 1 | AF2 | homo-2-mer | AB | abrogated_prodrug_activation | ||||||||
P9WJV1 | mmpL5 | 964 | 2794 | Clofazimine | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WJV1 | mmpL5 | 964 | 5388906 | Bedaquiline | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WJS7 | mmpS5 | 142 | 2794 | Clofazimine | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
P9WJS7 | mmpS5 | 142 | 5388906 | Bedaquiline | ungrouped | 0 | AF2 | monomer | A | drug_efflux | ||||||||
I6Y8F7 | mmpR5 | 165 | 2794 | Clofazimine | ungrouped | 0 | Exp | homo-4-mer | 4nb5 | ABCD | gene_regulation | |||||||
I6Y8F7 | mmpR5 | 165 | 5388906 | Bedaquiline | ungrouped | 0 | Exp | homo-4-mer | 4nb5 | ABCD | gene_regulation | |||||||
P9WJ63 | tlyA | 268 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | abrogation_of_drug_target_methylation | ||||||||
O06394 | Rv0528 | 529 | 37768 | Amikacin | aminoglycoside | 0 | AF2 | monomer | A | unclear | ||||||||
O06394 | Rv0528 | 529 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WG47 | gyrA | 838 | 152946 | Moxifloxacin | fluoroquinolone | 1 | AF2 | Trans | hetero-2-2-mer | 5bs8 | AC | 5bs8 | MFX | MFX | P9WG45 | drug_target_alteration | ||
P9WG47 | gyrA | 838 | 149096 | Levofloxacin | fluoroquinolone | 1 | AF2 | Trans | hetero-2-2-mer | 5btg | AC | 5btg | LFX | LFX | P9WG45 | drug_target_alteration | ||
P9WMC1 | ethR | 216 | 2761171 | Ethionamide | ungrouped | 0 | Exp | homo-2-mer | 5mym | AB | gene_regulation | |||||||
P9WPV7 | atpB | 250 | 5388906 | Bedaquiline | ungrouped | 1 | Hom | Trans | hetero-3-3-1-1-1-1-1-9-mer | 7jga | I | 7jga | BQ1 | BQ1 | P9WPU7, P9WPU5, P9WPV3, P9WPV5, P9WPV1, P9WPU9, P9WPS1 | drug_target_alteration | ||
P9WPC9 | clpC1 | 848 | 1046 | Pyrazinamide | ungrouped | 1 | Hom | homo-6-mer | 5og1.1 | ABCDEF | unclear | |||||||
P9WKV1 | Rv0485 | 438 | 3767 | Isoniazid | ungrouped | 0 | AF2 | homo-2-mer | AB | gene_regulation | ||||||||
P9WKV1 | Rv0485 | 438 | 2761171 | Ethionamide | ungrouped | 0 | AF2 | homo-2-mer | AB | gene_regulation | ||||||||
P9WPS1 | atpE | 81 | 5388906 | Bedaquiline | ungrouped | 1 | Hom | Trans | hetero-3-3-1-1-1-1-1-9-mer | 7jga | LMNOPQRST | 7jga | BQ1 | BQ1 | P9WPU7, P9WPU5, P9WPV3, P9WPV5, P9WPV1, P9WPU9, P9WPV7 | drug_target_alteration | ||
P9WH63 | rpsL | 124 | 19649 | Streptomycin | aminoglycoside | 1 | Exp | ribosomal protein | 5v93 | f | unclear | |||||||
I6YDN6 | pepQ | 372 | 2794 | Clofazimine | ungrouped | 0 | AF2 | homo-2-mer | AB | unclear | ||||||||
I6YDN6 | pepQ | 372 | 5388906 | Bedaquiline | ungrouped | 0 | AF2 | homo-2-mer | AB | unclear | ||||||||
O33195 | Rv1693 | 58 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear | ||||||||
P9WH63 | rpsL | 124 | 19649 | Streptomycin | aminoglycoside | 1 | Exp | ribosomal protein | 5v93 | f | unclear | |||||||
I6YDN6 | pepQ | 372 | 2794 | Clofazimine | ungrouped | 0 | AF2 | homo-2-mer | AB | unclear | ||||||||
I6YDN6 | pepQ | 372 | 5388906 | Bedaquiline | ungrouped | 0 | AF2 | homo-2-mer | AB | unclear | ||||||||
O33195 | Rv1693 | 58 | 3000502 | Capreomycin | ungrouped | 0 | AF2 | monomer | A | unclear |