3C-like proteinase (3CL-PRO) | P0DTD1 PRO_0000449623

Oligo-State	Ligands	GMQE	QMEAN
Homo-dimer (matching prediction)	None	0.99	0.58

Global Quality Estimate

Local Quality Estimate

Comparison

Template	Seq Identity	Coverage	Description
6lu7.1.B	100.00%		main protease

Ligand	Added to Model	Description
02J-ALA-VAL-LEU-PJE-010	✕ - Clashing with protein.	N-[(5-METHYLISOXAZOL-3-YL)CARB...
02J-ALA-VAL-LEU-PJE-010	✕ - Clashing with protein.	N-[(5-METHYLISOXAZOL-3-YL)CARB...

Model-Template Alignment

Template	Seq Identity	Coverage	Description
6y2g.1.A	100.00%		Replicase polyprotein 1ab

Ligand	Added to Model	Description
GLY	✓	GLYCINE
O6K	✓	~{tert}-butyl ~{N}-[1-[(2~{S})...
O6K	✓	~{tert}-butyl ~{N}-[1-[(2~{S})...

Structure
Assessment

Oligo-State

Ligands

GMQE

QMEAN

Homo-dimer (matching prediction)

2 x T8J

0.99

0.62

2 x 1-[4-(thiophene-2-carbonyl)piperazin-1-yl]ethan-1-one

T8J.4:	11 residues within 4Å: Chain A: T.25, H.41, C.44, T.45, S.46, M.49, N.142, G.143, S.144, C.145, H.163 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.25 Hydrogen bonds: A:G.143, A:S.144, A:C.145
T8J.8:	11 residues within 4Å: Chain B: T.25, H.41, C.44, T.45, S.46, M.49, N.142, G.143, S.144, C.145, H.163 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:T.25 Hydrogen bonds: B:G.143, B:S.144, B:C.145

Global Quality Estimate

Local Quality Estimate

Comparison

Template	Seq Identity	Coverage	Description
5rfv.1.B	100.00%		3C-like proteinase

Ligand	Added to Model	Description
T8J	✓	1-[4-(thiophene-2-carbonyl)pip...
T8J	✓	1-[4-(thiophene-2-carbonyl)pip...
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE

Model-Template Alignment

Structure
Assessment

Oligo-State

Ligands

GMQE

QMEAN

Homo-dimer (matching prediction)

2 x HWH

0.99

0.28

2 x ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide

HWH.4:	11 residues within 4Å: Chain A: H.41, M.49, H.164, M.165, E.166, L.167, P.168, D.187, R.188, Q.189, T.190 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.165, A:Q.189 Hydrogen bonds: A:E.166, A:Q.189 pi-Stacking: A:H.41
HWH.9:	11 residues within 4Å: Chain B: H.41, M.49, H.164, M.165, E.166, L.167, P.168, D.187, R.188, Q.189, T.190 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:M.165, B:Q.189 Hydrogen bonds: B:E.166, B:Q.189 pi-Stacking: B:H.41

Global Quality Estimate

Local Quality Estimate

Comparison

Template	Seq Identity	Coverage	Description
5r7z.1.B	100.00%		3C-like proteinase

Ligand	Added to Model	Description
HWH	✓	~{N}-[2-(5-fluoranyl-1~{H}-ind...
HWH	✓	~{N}-[2-(5-fluoranyl-1~{H}-ind...
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE
DMS	✕ - Not biologically relevant.	DIMETHYL SULFOXIDE

Model-Template Alignment

Structure
Assessment

Oligo-State

Ligands

GMQE

QMEAN

Homo-dimer (matching prediction)

2 x AZP

0.99

0.03

2 x (5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE

AZP.1:

23 residues within 4Å:

Chain A: T.25, T.26, H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192

15 PLIP interactions:

AZP.4:

23 residues within 4Å:

Chain B: T.25, T.26, H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192

16 PLIP interactions:

Global Quality Estimate

Local Quality Estimate

Comparison

Template	Seq Identity	Coverage	Description
2a5i.1.A	96.08%		3C-like peptidase

Ligand	Added to Model	Description
AZP	✓	(5S,8S,14R)-ETHYL 11-(3-AMINO-...
AZP	✓	(5S,8S,14R)-ETHYL 11-(3-AMINO-...
EDO	✕ - Not biologically relevant.	1,2-ETHANEDIOL
EDO	✕ - Not biologically relevant.	1,2-ETHANEDIOL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL

Model-Template Alignment

Structure
Assessment

Oligo-State

Ligands

GMQE

QMEAN

Homo-dimer (matching prediction)

2 x DTZ

0.98

0.15

Global Quality Estimate

Local Quality Estimate

Comparison

Template	Seq Identity	Coverage	Description
2z9j.1.A	96.08%		3C-like proteinase

Model-Template Alignment

Biounit Oligo State	Homo-dimer
QSQE	0.95
Method	X-ray, 2.16 Å
Seq Similarity	0.62
Coverage	1.00
Range	1-306

Biounit Oligo State	Homo-dimer
QSQE	0.98
Method	X-ray, 2.20 Å
Seq Similarity	0.62
Coverage	1.00
Range	1-301

Biounit Oligo State	Homo-dimer
QSQE	0.89
Method	X-ray, 1.48 Å
Seq Similarity	0.62
Coverage	1.00
Range	1-304

Biounit Oligo State	Homo-dimer
QSQE	0.92
Method	X-ray, 1.59 Å
Seq Similarity	0.62
Coverage	1.00
Range	1-304

Biounit Oligo State	Homo-dimer
QSQE	0.90
Method	X-ray, 1.88 Å
Seq Similarity	0.61
Coverage	1.00
Range	1-306

Export Alignment

Alignment Options