| Oligo-State | Ligands | GMQE | QMEAN | ||||
|---|---|---|---|---|---|---|---|
| Homo-dimer (matching prediction) | 0.97 | 0.65 | |||||
2 x 1-[4-(thiophene-2-carbonyl)piperazin-1-yl]ethan-1-one
| |||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 5rfv.1.B | 100.00% | 3C-like proteinase PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102306 |
| Biounit Oligo State | Homo-dimer |
| QSQE | 0.95 |
| Method | X-ray, 1.48 Å |
| Seq Similarity | 0.63 |
| Coverage | 1.00 |
| Range | 1-304 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | 1-[4-(thiophene-2-carbonyl)pi… | |
| ✓ | 1-[4-(thiophene-2-carbonyl)pi… | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN | ||||
|---|---|---|---|---|---|---|---|
| Homo-dimer (matching prediction) | 0.97 | 0.30 | |||||
2 x ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide
| |||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 5r7z.1.B | 100.00% | 3C-like proteinase PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with Z1220452176 |
| Biounit Oligo State | Homo-dimer |
| QSQE | 0.97 |
| Method | X-ray, 1.59 Å |
| Seq Similarity | 0.63 |
| Coverage | 1.00 |
| Range | 1-304 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | ~{N}-[2-(5-fluoranyl-1~{H}-in… | |
| ✓ | ~{N}-[2-(5-fluoranyl-1~{H}-in… | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE | |
| ✕ - Not biologically relevant. | DIMETHYL SULFOXIDE |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN |
|---|---|---|---|
| Homo-dimer (matching prediction) | None | 0.96 | 0.61 |
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6lu7.1.B | 100.00% | 3C-like proteinase The crystal structure of COVID-19 main protease in complex with an inhibitor N3 |
| Biounit Oligo State | Homo-dimer |
| QSQE | 0.99 |
| Method | X-ray, 2.16 Å |
| Seq Similarity | 0.63 |
| Coverage | 1.00 |
| Range | 1-306 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✕ - Clashing with protein. | N-[(5-METHYLISOXAZOL-3-YL)CAR… | |
| ✕ - Clashing with protein. | N-[(5-METHYLISOXAZOL-3-YL)CAR… |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN | ||||
|---|---|---|---|---|---|---|---|
| Homo-dimer (matching prediction) | 0.95 | 0.19 | |||||
2 x ZINC(II)HYDROGENSULFIDE
| |||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 2z9j.1.A | 96.08% | 3C-like proteinase Complex structure of SARS-CoV 3C-like protease with EPDTC |
| Biounit Oligo State | Homo-dimer |
| QSQE | 0.95 |
| Method | X-ray, 1.95 Å |
| Seq Similarity | 0.62 |
| Coverage | 1.00 |
| Range | 1-302 |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN | ||||
|---|---|---|---|---|---|---|---|
| Homo-dimer (matching prediction) | 0.95 | 0.06 | |||||
2 x (5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZYL-14-HYDROXY-5-ISOBUTYL-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,11-TETRAAZAPENTADECAN-15-OATE
| |||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 2a5i.1.A | 96.08% | 3C-like peptidase Crystal structures of SARS coronavirus main peptidase inhibited by an aza-peptide epoxide in the space group C2 |
| Biounit Oligo State | Homo-dimer |
| QSQE | 0.92 |
| Method | X-ray, 1.88 Å |
| Seq Similarity | 0.62 |
| Coverage | 1.00 |
| Range | 1-306 |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Homo-dimer (matching prediction) | 0.95 | 0.48 | |||||||
1 x GLYCINE
2 x ~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate
| |||||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6y2g.1.A | 100.00% | 3C-like proteinase Crystal structure (orthorhombic form) of the complex resulting from the reaction between SARS-CoV-2 (2019-nCoV) main protease and tert-butyl (1-((S)-1-(((S)-4-(benzylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)amino)-3-cyclopropyl-1-oxopropan-2-yl)-2-oxo-1,2-dihydropyridin-3-yl)carbamate (alpha-ketoamide 13b) |
| Biounit Oligo State | Homo-dimer |
| QSQE | 1.00 |
| Method | X-ray, 2.20 Å |
| Seq Similarity | 0.63 |
| Coverage | 1.00 |
| Range | 1-301 |
Model-Template Alignment
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