Filter results by: Taxon Proteome
1 - 50 of 85916 UniProtKB matches
(94694 models, 41631 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
P97793
(ALK_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
ALK tyrosine kinase receptor;
Anaplastic lymphoma kinase;
CD246;
Q8CFW7
(C2D2A_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Coiled-coil and C2 domain-containing protein 2A;
P70170
(ABCC9_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
ATP-binding cassette sub-family C member 9;
Sulfonylurea receptor 2;
Q91VN0
(LRP5_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Low-density lipoprotein receptor-related protein 5;
Low-density lipoprotein receptor-related protein 7;
O35961
(SMR2E_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Submaxillary gland androgen-regulated protein 2, isoform epsilon;
Salivary protein MSG2, isoform epsilon;
A2A863
(ITB4_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Integrin beta-4;
CD104;
O08999
(LTBP2_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Latent-transforming growth factor beta-binding protein 2;
Q8K449
(ABCA9_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
ATP-binding cassette sub-family A member 9;
Q6ZQH8
(NU188_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Nucleoporin NUP188;
Q5QNQ9
(CORA1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Collagen alpha-1(XXVII) chain;
Q3UH06
(RREB1_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Ras-responsive element-binding protein 1;
RAS-responsive zinc finger transcription factor RREB;
Q8K442
(ABC8A_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
ABC-type organic anion transporter ABCA8A;
ATP-binding cassette sub-family A member 8A;
P48754
(BRCA1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Breast cancer type 1 susceptibility protein homolog;
RING-type E3 ubiquitin transferase BRCA1;
Q6A070
(TGRM1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
TOG array regulator of axonemal microtubules protein 1;
Crescerin-1;
Protein FAM179B;
Q2EMV9
(PAR14_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Protein mono-ADP-ribosyltransferase PARP14;
ADP-ribosyltransferase diphtheria toxin-like 8;
Collaborator of STAT6;
Poly [ADP-ribose] polymerase 14;
Q60575
(KIF1B_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Kinesin-like protein KIF1B;
Q9R053
(SCNBA_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Sodium channel protein type 11 subunit alpha;
NaN;
Sensory neuron sodium channel 2;
Sodium channel protein type XI subunit alpha;
Voltage-gated sodium channel subunit alpha Nav1.9;
P01029
(CO4B_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Complement C4-B;
Complement C4 beta chain;
Complement C4 alpha chain;
C4a anaphylatoxin;
Complement C4b-B;
Complement C4 gamma chain;
Q8BLI0
(ATL1_MOUSE)
Swiss-ProtMus musculus
(Mouse)
ADAMTS-like protein 1;
Punctin-1;
Q8VIM6
(STRC_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Stereocilin;
A2AIV2
(VIR_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Protein virilizer homolog;
A2AKG8
(FOCAD_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Focadhesin;
Q8BKI2
(TNR6B_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Trinucleotide repeat-containing gene 6B protein;
Q8BXR5
(NALCN_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Sodium leak channel NALCN;
Sodium leak channel non-selective protein;
Voltage gated channel-like protein 1;
Q8K448
(ABCA5_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Cholesterol transporter ABCA5;
ATP-binding cassette sub-family A member 5;
Q3UHH1
(ZSWM8_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Zinc finger SWIM domain-containing protein 8;
Q8K389
(CK5P2_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
CDK5 regulatory subunit-associated protein 2;
CDK5 activator-binding protein C48;
Q61037
(TSC2_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Tuberin;
Tuberous sclerosis 2 protein homolog;
O88207
(CO5A1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Collagen alpha-1(V) chain;
P20357
(MTAP2_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Microtubule-associated protein 2;
A0AAQ4VMX2
(CO4A_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Complement C4-A;
Sex-limited protein;
Complement C4 beta chain;
Complement C4-A alpha chain;
C4a anaphylatoxin;
Complement C4b-A;
Complement C4 gamma chain;
Q6PFD9
(NUP98_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Nuclear pore complex protein Nup98-Nup96;
Nuclear pore complex protein Nup98;
98 kDa nucleoporin;
Nucleoporin Nup98;
Nup98;
Nuclear pore complex protein Nup96;
96 kDa nucleoporin;
Nucleoporin Nup96;
Nup96;
Q9QZQ1
(AFAD_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Afadin;
Afadin adherens junction formation factor;
Protein Af-6;
O70481
(UBR1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
E3 ubiquitin-protein ligase UBR1;
N-recognin-1;
Ubiquitin-protein ligase E3-alpha-1;
Ubiquitin-protein ligase E3-alpha-I;
Q6ZPY7
(KDM3B_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Lysine-specific demethylase 3B;
JmjC domain-containing histone demethylation protein 2B;
Jumonji domain-containing protein 1B;
[histone H3]-dimethyl-L-lysine(9) demethylase 3B;
Q69Z38
(PEAK1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Inactive tyrosine-protein kinase PEAK1;
Pseudopodium-enriched atypical kinase 1;
Sugen kinase 269;
Tyrosine-protein kinase SgK269;
Q8CG19
(LTBP1_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Latent-transforming growth factor beta-binding protein 1;
Transforming growth factor beta-1-binding protein 1;
P97789
(XRN1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
5'-3' exoribonuclease 1;
Protein Dhm2;
Strand-exchange protein 1 homolog;
Q80TE4
(SI1L2_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Signal-induced proliferation-associated 1-like protein 2;
O88286
(WIZ_MOUSE)
Swiss-ProtMus musculus
(Mouse)
Protein Wiz;
Widely-interspaced zinc finger-containing protein;
D3YUB6
(BTBD8_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
BTB/POZ domain-containing protein 8;
AP2-interacting clathrin-endocytosis protein;
Q9QXL2
(KI21A_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Kinesin-like protein KIF21A;
P40201
(CHD1_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Chromodomain-helicase-DNA-binding protein 1;
ATP-dependent helicase CHD1;
Q60592
(MAST2_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Microtubule-associated serine/threonine-protein kinase 2;
Q62383
(SPT6H_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Transcription elongation factor SPT6;
Q9QXL1
(KI21B_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Kinesin-like protein KIF21B;
Kinesin-like protein KIF6;
Q6QI06
(RICTR_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Rapamycin-insensitive companion of mTOR;
AVO3 homolog;
Protein pianissimo;
Q8K441
(ABCA6_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
ATP-binding cassette sub-family A member 6;
Q62230
(SN_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Sialoadhesin;
Sheep erythrocyte receptor;
Sialic acid-binding Ig-like lectin 1;
CD169;
E9PZM4
(CHD2_MOUSE)
Swiss-Prot
Mus musculus
(Mouse)
Chromodomain-helicase-DNA-binding protein 2;
ATP-dependent helicase CHD2;
1 - 50 of 85916
Mus musculus (Mouse)

The house mouse (Mus musculus) is a small mammal of the order Rodentia, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. House mice thrive under a variety of conditions; they are found in and around homes and commercial structures, as well as in open fields and agricultural lands where they build underground gangways and nests.

Mus musculus is one of the most important model organisms in biology and medicine. Mice are biologically similar to humans and are thus good models for genetic diseases and research on the immune system.

The complete mouse reference genome was sequenced in 2002.

"Mus musculus", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Mus musculus, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Mus musculus for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Mus musculus, please visit UniProtKB.

You can easily download the latest protein sequences for Mus musculus proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
21,80319,10343,738

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Mus musculus reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Mus musculus proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer20-mer21-mer24-mer25-mer32-mer34-mer36-mer39-mer40-mer44-mer46-mer48-mer60-mer62-mer
38,9153,43929865659144215022184741433118411117114113
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