| UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
|---|---|---|---|---|
| A2ARV4 (LRP2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Low-density lipoprotein receptor-related protein 2; Glycoprotein 330; Megalin; | |
| Q91ZX7 (LRP1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Prolow-density lipoprotein receptor-related protein 1; Alpha-2-macroglobulin receptor; CD91; Low-density lipoprotein receptor-related protein 1 85 kDa subunit; LRP-85; Low-density lipoprotein receptor-related protein 1 515 kDa subunit; LRP-515; Low-density lipoprotein receptor-related protein 1 intracellular domain; LRPICD; | |
| Q8CIZ8 (VWF_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | von Willebrand factor; von Willebrand antigen 2; von Willebrand antigen II; | |
| Q9JI18 (LRP1B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Low-density lipoprotein receptor-related protein 1B; Low-density lipoprotein receptor-related protein-deleted in tumor; | |
| Q9QXZ0 (MACF1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4; Actin cross-linking family 7; | |
| P70227 (ITPR3_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Inositol 1,4,5-trisphosphate-gated calcium channel ITPR3; IP3 receptor isoform 3; Inositol 1,4,5-trisphosphate receptor type 3; Type 3 inositol 1,4,5-trisphosphate receptor; | |
| Q9CQC8 (SPG21_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Maspardin; Acid cluster protein 33; Spastic paraplegia 21 autosomal recessive Mast syndrome protein homolog; | |
| Q9EQH4 (TAF8_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Transcription initiation factor TFIID subunit 8; Protein taube nuss; TBP-associated factor 8; | |
| Q8R2Z0 (ADIPL_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Adipolin; Adipose-derived insulin-sensitizing factor; Complement C1q tumor necrosis factor-related protein 12; Adipolin fC1QTNF12; Adipolin fCTRP12; Adipolin full-length form; Adipolin gC1QTNF12; Adipolin cleaved form; Adipolin gCTRP12; | |
| O89079 (COPE_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Coatomer subunit epsilon; Epsilon-coat protein; | |
| P59532 (T2R41_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Taste receptor type 2 member 41; T2R12; T2R26; | |
| Q8C142 (ARH_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Low density lipoprotein receptor adapter protein 1; Autosomal recessive hypercholesterolemia protein homolog; | |
| Q91WU6 (ZDHC7_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Palmitoyltransferase ZDHHC7; Acyltransferase ZDHHC7; GABA-A receptor-associated membrane protein 2; SERZ-beta; Zinc finger DHHC domain-containing protein 7; | |
| Q80ZV0 (RNH2B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Ribonuclease H2 subunit B; Deleted in lymphocytic leukemia 8 homolog; Ribonuclease HI subunit B; | |
| Q80X59 (TMC5B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Transmembrane and coiled-coil domain-containing protein 5B; | |
| Q7M724 (TR106_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Taste receptor type 2 member 106; | |
| Q8BPG6 (SUMF2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Inactive C-alpha-formylglycine-generating enzyme 2; Sulfatase-modifying factor 2; | |
| O35449 (PRRT1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Proline-rich transmembrane protein 1; Dispanin subfamily D member 1; Synapse differentiation-induced protein 4; | |
| Q8BW66 (S2548_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Solute carrier family 25 member 48; | |
| P09925 (SURF1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Surfeit locus protein 1; | |
| P41155 (TNFC_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Lymphotoxin-beta; Tumor necrosis factor C; Tumor necrosis factor ligand superfamily member 3; | |
| Q9D903 (EBP2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Probable rRNA-processing protein EBP2; | |
| Q9D0L7 (ARM10_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Armadillo repeat-containing protein 10; | |
| Q9D738 (ASB12_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Ankyrin repeat and SOCS box protein 12; | |
| O88667 (RAD_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | GTP-binding protein RAD; | |
| Q8BWF2 (GIMA5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | GTPase IMAP family member 5; GTPase of the immunity-associated protein 5; Immunity-associated nucleotide 4-like 1 protein; Immunity-associated protein 3; | |
| Q8BWJ4 (LRAD4_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Low-density lipoprotein receptor class A domain-containing protein 4; | |
| Q9D659 (VISTA_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | V-type immunoglobulin domain-containing suppressor of T-cell activation; Platelet receptor Gi24; V-set domain-containing immunoregulatory receptor; V-set immunoregulatory receptor; | |
| Q64726 (ZA2G_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Zinc-alpha-2-glycoprotein; | |
| Q7TPE5 (S7A6O_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Probable RNA polymerase II nuclear localization protein SLC7A6OS; Solute carrier family 7 member 6 opposite strand transcript homolog; | |
| A2RSX4 (STPG3_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Protein STPG3; Sperm-tail PG-rich repeat-containing protein 3; | |
| O54819 (TFPI1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Tissue factor pathway inhibitor; Extrinsic pathway inhibitor; Lipoprotein-associated coagulation inhibitor; | |
| P97931 (UNG_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Uracil-DNA glycosylase; | |
| Q60884 (O8G17_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Olfactory receptor 8G17; Odorant receptor M15; Olfactory receptor 146; Olfactory receptor 171-10; Olfactory receptor 7D; | |
| Q9JJ80 (RPF2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Ribosome production factor 2 homolog; Brix domain-containing protein 1; Ribosome biogenesis protein RPF2 homolog; | |
| Q9WUU7 (CATZ_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Cathepsin Z; | |
| Q8BL03 (S2529_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Mitochondrial basic amino acids transporter; Carnitine/acylcarnitine translocase-like; Mitochondrial carnitine/acylcarnitine carrier protein CACL; Mitochondrial ornithine transporter 3; Solute carrier family 25 member 29; | |
| Q9D0Q7 (RM45_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Large ribosomal subunit protein mL45; 39S ribosomal protein L45, mitochondrial; | |
| Q8VCZ8 (RUSD1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | RNA pseudouridylate synthase domain-containing protein 1; Ribosomal large subunit pseudouridine synthase C-like protein; | |
| Q5SQP1 (HORM2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | HORMA domain-containing protein 2; | |
| Q91ZM9 (DOK5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Docking protein 5; Downstream of tyrosine kinase 5; | |
| O88531 (PPT1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Palmitoyl-protein thioesterase 1; Palmitoyl-protein hydrolase 1; | |
| Q91VU1 (YIPF1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Protein YIPF1; YIP1 family member 1; | |
| D3YXG0 (HMCN1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Hemicentin-1; Fibulin-6; | |
| Q8BKX6 (SMG1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Serine/threonine-protein kinase SMG1; Lambda/iota protein kinase C-interacting protein; Nonsense mediated mRNA decay-associated PI3K-related kinase SMG1; | |
| D3Z2X2 (DNHD1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Dynein heavy chain domain-containing protein 1; Coiled-coil domain-containing protein 35; Dynein heavy chain domain 1-like protein; | |
| Q9Z104 (HM20B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related; BRCA2-associated factor 35; HMG box-containing protein 20B; Structural DNA-binding protein BRAF35; | |
| Q80XA0 (TM121_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Transmembrane protein 121; Protein hole; | |
| Q8BHC0 (LYVE1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Lymphatic vessel endothelial hyaluronic acid receptor 1; Cell surface retention sequence-binding protein 1; Extracellular link domain-containing protein 1; | |
| Q9DAM5 (TPC_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Mitochondrial thiamine pyrophosphate carrier; Solute carrier family 25 member 19; |
The house mouse (Mus musculus) is a small mammal of the order Rodentia, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. House mice thrive under a variety of conditions; they are found in and around homes and commercial structures, as well as in open fields and agricultural lands where they build underground gangways and nests.
Mus musculus is one of the most important model organisms in biology and medicine. Mice are biologically similar to humans and are thus good models for genetic diseases and research on the immune system.
The complete mouse reference genome was sequenced in 2002.
From left to right: i) The number of proteins in the reference proteome of Mus musculus, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Mus musculus for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Mus musculus, please visit UniProtKB.
You can easily download the latest protein sequences for Mus musculus proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_04 that was used for the most up to date SWISS-MODEL Repository.
| Proteins in proteome | Sequences modelled | Models |
| 21,856 | 19,184 | 43,398 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Mus musculus reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Mus musculus proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
| Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 15-mer | 16-mer | 18-mer | 20-mer | 21-mer | 22-mer | 24-mer | 25-mer | 32-mer | 34-mer | 36-mer | 39-mer | 40-mer | 44-mer | 48-mer | 60-mer | 62-mer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38,549 | 3,457 | 300 | 655 | 55 | 137 | 18 | 54 | 2 | 22 | 7 | 49 | 5 | 2 | 22 | 3 | 2 | 1 | 1 | 20 | 4 | 3 | 1 | 1 | 1 | 7 | 1 | 4 | 11 | 4 |
