| UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
|---|---|---|---|---|
| Q3SXB8 (COL11_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Collectin-11; Collectin kidney protein 1; | |
| P67778 (PHB1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Prohibitin 1; B-cell receptor-associated protein 32; | |
| P70284 (TGIF1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Homeobox protein TGIF1; 5'-TG-3'-interacting factor 1; | |
| P17433 (SPI1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Transcription factor PU.1; 31 kDa-transforming protein; SFFV proviral integration 1 protein; | |
| Q6XJV4 (MO2R4_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Cell surface glycoprotein CD200 receptor 4; CD200 cell surface glycoprotein receptor-like 4; CD200 cell surface glycoprotein receptor-like a; Cell surface glycoprotein OX2 receptor 4; | |
| Q80W15 (IBPL1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Insulin-like growth factor-binding protein-like 1; IGFBP-related protein 10; Insulin-like growth factor-binding-related protein 4; | |
| Q9R088 (KITM_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Thymidine kinase 2, mitochondrial; 2'-deoxyuridine kinase TK2; Deoxycytidine kinase TK2; Mt-TK; | |
| Q6U7R4 (TIMD4_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | T-cell immunoglobulin and mucin domain-containing protein 4; Spleen, mucin-containing, knockout of lymphotoxin protein; T-cell immunoglobulin mucin receptor 4; T-cell membrane protein 4; | |
| Q8BTP3 (MO2R5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Cell surface glycoprotein CD200 receptor 5; CD200 cell surface glycoprotein receptor-like 5; CD200 cell surface glycoprotein receptor-like e; Cell surface glycoprotein OX2 receptor 5; | |
| Q3TEW6 (MPZL1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Myelin protein zero-like protein 1; Protein zero-related; | |
| Q9QUM4 (SLAF1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Signaling lymphocytic activation molecule; SLAM family member 1; CD150; | |
| P01878 (IGHA_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Ig alpha chain C region; | |
| Q8BFR6 (ZFAN1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | AN1-type zinc finger protein 1; Zinc finger AN1-type-containing protein 1; | |
| P22005 (PENK_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Proenkephalin-A; Synenkephalin; Met-enkephalin; Opioid growth factor; OGF; PENK(114-133); PENK(143-184); Met-enkephalin-Arg-Ser-Leu; Leu-enkephalin; PENK(238-259); Met-enkephalin-Arg-Phe; Neuropeptide BAM22; Bovine adrenal medulla peptide 22; Neuropeptide BAM20; Bovine adrenal medulla peptide 20; Neuropeptide BAM8-22; Bovine adrenal medulla peptide 8-22; BAM(8-22); | |
| Q61166 (MARE1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Microtubule-associated protein RP/EB family member 1; APC-binding protein EB1; End-binding protein 1; | |
| Q9D2F5 (STPG1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | O(6)-methylguanine-induced apoptosis 2; Sperm-tail PG-rich repeat-containing protein 1; | |
| Q8JZS7 (HMGC2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic; 3-hydroxy-3-methylglutaryl-CoA lyase-like protein 1; | |
| Q80XN0 (BDH_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | D-beta-hydroxybutyrate dehydrogenase, mitochondrial; 3-hydroxybutyrate dehydrogenase; | |
| Q9QYK9 (KCC1B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Calcium/calmodulin-dependent protein kinase type 1B; CaM kinase I beta; Pregnancy up-regulated non-ubiquitously-expressed CaM kinase homolog; | |
| Q01721 (GAS1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Growth arrest-specific protein 1; | |
| Q9CQA5 (MED4_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Mediator of RNA polymerase II transcription subunit 4; Mediator complex subunit 4; | |
| Q9JJ69 (KCIP2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | A-type potassium channel modulatory protein KCNIP2; Kv channel-interacting protein 2; Potassium channel-interacting protein 2; | |
| Q9D3D0 (TTPAL_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Alpha-tocopherol transfer protein-like; | |
| Q9QZ08 (NAGK_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | N-acetyl-D-glucosamine kinase; GlcNAc kinase; Muramyl dipeptide kinase; N-acetyl-D-mannosamine kinase; | |
| Q8C131 (HCAR1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Hydroxycarboxylic acid receptor 1; G-protein coupled receptor 81; | |
| Q8VCY8 (PLPR2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Phospholipid phosphatase-related protein type 2; Inactive phospholipid phosphatase PLPPR2; Lipid phosphate phosphatase-related protein type 2; Plasticity-related gene 4 protein; | |
| Q62193 (RFA2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Replication protein A 32 kDa subunit; Replication factor A protein 2; Replication protein A 34 kDa subunit; | |
| Q9CPX5 (PLAT5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Phospholipase A and acyltransferase 5; Ca(2+)-independent N-acyltransferase; H-rev107-like protein 5; HRAS-like suppressor 5; | |
| Q9CQ56 (USE1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Vesicle transport protein USE1; Protein D12; USE1-like protein; | |
| Q9JHR9 (NRIP2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Nuclear receptor-interacting protein 2; Neuronal-interacting factor X 1; | |
| Q9CZ42 (NNRD_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | ATP-dependent (S)-NAD(P)H-hydrate dehydratase; ATP-dependent NAD(P)HX dehydratase; Carbohydrate kinase domain-containing protein; NAD(P)HX dehydratase; | |
| Q9R078 (AAKB1_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | 5'-AMP-activated protein kinase subunit beta-1; | |
| Q9CQX3 (BPIA5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | BPI fold-containing family A member 5; BPI fold-containing family A member Pluncl; Palate lung and nasal carcinoma-like protein; Short palate lung and nasal clone protein 5; Tongue plunc-like protein; | |
| Q8BX07 (CTDS2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2; Small C-terminal domain phosphatase 2; Small CTD phosphatase 2; | |
| P09021 (HXA5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Homeobox protein Hox-A5; Homeobox protein Hox-1.3; Homeobox protein M2; | |
| Q5QD16 (TAAR3_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Trace amine-associated receptor 3; | |
| P01582 (IL1A_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Interleukin-1 alpha; | |
| O88834 (SHD_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | SH2 domain-containing adapter protein D; | |
| Q8QZY6 (TSN14_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Tetraspanin-14; Transmembrane 4 superfamily member 14; | |
| P28231 (CXB3_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Gap junction beta-3 protein; Connexin-31; | |
| Q80VP9 (ASPH2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Aspartate beta-hydroxylase domain-containing protein 2; | |
| A2APY7 (NDUF5_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Arginine-hydroxylase NDUFAF5, mitochondrial; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5; Putative methyltransferase NDUFAF5; | |
| Q9QZ29 (IGB1B_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Immunoglobulin-binding protein 1b; Alpha 4-b protein; CD79a-binding protein 1b; Protein alpha-4-b; | |
| Q9ESN5 (CENPK_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Centromere protein K; SoxLZ/Sox6 leucine zipper-binding protein in testis; | |
| E9Q5Z5 (FANCF_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Fanconi anemia group F protein; | |
| Q6PAL1 (DRAXI_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Draxin; Dorsal inhibitory axon guidance protein; Dorsal repulsive axon guidance protein; Neucrin; | |
| Q8C6E0 (CFA36_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Cilia- and flagella-associated protein 36; Coiled-coil domain-containing protein 104; | |
| Q6TCG5 (PAQR6_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Membrane progestin receptor delta; Membrane progesterone P4 receptor delta; Membrane progesterone receptor delta; Progesterone and adipoQ receptor family member 6; Progestin and adipoQ receptor family member 6; Progestin and adipoQ receptor family member VI; | |
| O70137 (ALX3_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Homeobox protein aristaless-like 3; Proline-rich transcription factor ALX3; | |
| Q8K4K3 (TRIB2_MOUSE) | Swiss-Prot | Mus musculus (Mouse) | Tribbles homolog 2; |
The house mouse (Mus musculus) is a small mammal of the order Rodentia, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. House mice thrive under a variety of conditions; they are found in and around homes and commercial structures, as well as in open fields and agricultural lands where they build underground gangways and nests.
Mus musculus is one of the most important model organisms in biology and medicine. Mice are biologically similar to humans and are thus good models for genetic diseases and research on the immune system.
The complete mouse reference genome was sequenced in 2002.
From left to right: i) The number of proteins in the reference proteome of Mus musculus, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Mus musculus for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Mus musculus, please visit UniProtKB.
You can easily download the latest protein sequences for Mus musculus proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2026_01 that was used for the most up to date SWISS-MODEL Repository.
| Proteins in proteome | Sequences modelled | Models |
| 21,852 | 19,249 | 43,644 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Mus musculus reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Mus musculus proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
| Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 15-mer | 16-mer | 18-mer | 20-mer | 21-mer | 22-mer | 24-mer | 25-mer | 26-mer | 30-mer | 32-mer | 34-mer | 39-mer | 40-mer | 44-mer | 48-mer | 60-mer | 62-mer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38,810 | 3,416 | 304 | 658 | 59 | 144 | 18 | 53 | 2 | 24 | 7 | 51 | 6 | 2 | 23 | 3 | 2 | 3 | 1 | 20 | 4 | 1 | 1 | 3 | 1 | 1 | 7 | 1 | 4 | 11 | 4 |