A0A0L8VGH0 | SWISS-MODEL Repository

A0A0L8VGH0 (A0A0L8VGH0_9SACH) Saccharomyces boulardii (nom inval)

RNA polymerase II transcription factor B subunit 2 UniProtKB InterPro Interactive Modelling

513 aa; Sequence (Fasta) ; 9 identical sequences: Saccharomyces cerevisiae: N1P1I8, C8ZIQ7, C7GJ76, Q02939, A0A6A5Q2X3, A6ZWD0, B3LKV2; Saccharomyces pastorianus: A0A6C1E152; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GPJ4

It is possible new templates exist for this target since these models were created.

Available Structures

26 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH	5oqj SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	3-508	16×ZN; 1×MG; 1×SF4;
Assess
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR	5oqm SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P19263; P20433; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;	3-508	16×ZN; 1×MG; 1×SF4;
Assess
Structure of a yeast closed complex with distorted DNA (CCdist)	6gym SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	3-508	1×SF4; 16×ZN; 1×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (comple…	7zsa SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	17×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex (consensus)	7o4j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA	7o75 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, comple…	7zsb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	17×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA	7o73 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)	7zs9 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02281; P04050; P06839; P06897; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; P62799; P84233; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	17×ZN; 1×MG; 1×SF4;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA	7o72 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast TFIIH in the contracted state within the pre-initiation complex	7o4k SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 10×ZN; 1×BEF; 1×MG; 1×ADP;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleoso…	8ceo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PPQ0; A0A6A5PRZ0; A0A6A5Q1T4; A0A6A5Q217; A0A6A5Q2S0; A0A6A5Q2T8; A0A6A5Q2X3; A0A6A5Q3S8; A0A6A5Q418; A0A6A5Q608; A0A6A5Q7U4; A0A6L0ZMK2; A0A6V8RKA4; A0A7I9BTI9; A0A8H4BU46; A0A8H4BW51; A0A8H4C0I9; A0A8H4C0R2; A0A8H4C1B0; A0A8H4C1U9; A0A8H4F9X3; A0A8H8ULN4; A0A8H8UMZ6; G4XSG8; P04050; P06839; P08518; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32570; P34087; P34162; P36100; P36145; P38902; P40422; P41896; P62799; P84233; Q00578; Q6AZJ8;	5-507	1×SF4; 17×ZN; 1×MG;
Assess
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble	7o4i SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 17×ZN; 1×BEF; 2×MG; 1×ADP;
Assess
Yeast TFIIH in the expanded state within the pre-initiation complex	7o4l SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P20433; P20435; P32776; P34087; P36100; P36145; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	5-507	1×SF4; 11×ZN; 1×BEF; 1×MG; 1×ADP;
Assess
RNA polymerase II pre-initiation complex (PIC1)	7ml0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	7-508	17×ZN; 1×MG; 1×SF4;
Assess
Nucleotide Excision Repair complex TFIIH Rad4-33	7m2u SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P06839; P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1;	7-507	1×SF4; 5×ZN; 2×CA;
Assess
RNA polymerase II initially transcribing complex (ITC)	7ml4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	7-507	15×ZN; 1×MG; 1×SF4;
Assess
Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening	7k04 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P06839; P14736; P32776; Q00578; Q02939; Q04231; Q04673; Q12004; Q3E7C1;	7-507	2×CA; 1×SF4; 5×ZN;
Assess
RNA polymerase II pre-initiation complex (PIC3)	7ml2 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	7-507	17×ZN; 1×MG; 1×SF4;
Assess
General transcription factor TFIIH (weak binding)	7ml3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P06839; P32776; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	7-507	7×ZN; 1×SF4;
Assess
RNA polymerase II pre-initiation complex (PIC2)	7ml1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;	7-507	19×ZN; 1×SF4; 1×MG;
Assess
Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex	7k01 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P06839; P32776; Q00578; Q02939; Q04673; Q12004; Q3E7C1;	7-507	5×ZN; 1×SF4;
Assess
Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2	3dom SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q02939; Q3E7C1;	437-509
Assess
Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2	3dgp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer Q02939; Q3E7C1;	447-508
Assess
Mediator-RNA Polymerase II Pre-Initiation Complex	5sva SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;	447-508	8×ZN; 1×MG;
Assess
the P-lobe of RNA polymerase II pre-initiation complex	5fmf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04050; P06839; P07273; P08518; P13393; P16370; P20433; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1;	447-508	2×MG; 9×ZN;
Assess

2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
7m2u.1.K	monomer	0.63	7-507	100.00
Assess
7ml0.1.Y	monomer	0.61	7-508	100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A0L8VGH0 (A0A0L8VGH0_9SACH) Saccharomyces boulardii (nom inval)

RNA polymerase II transcription factor B subunit 2 UniProtKBInterProInteractive Modelling

Available Structures

26 Experimental Structures

2 SWISS-MODEL models

Alignments

Background

Resolution

RNA polymerase II transcription factor B subunit 2 UniProtKB InterPro Interactive Modelling