SMTL ID : 7ml1.1

RNA polymerase II pre-initiation complex (PIC2)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
19 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)
1 x SF4: IRON/SULFUR CLUSTER(Covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yang, C. et al., Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell (2022)
Release Date
2022-02-02
Peptides
Tfb1: A
General transcription and DNA repair factor IIH subunit TFB4: B
General transcription and DNA repair factor IIH helicase subunit XPD: C
General transcription and DNA repair factor IIH subunit SSL1: D
RNA polymerase II transcription factor B subunit 2: E
General transcription and DNA repair factor IIH subunit TFB5: F
General transcription and DNA repair factor IIH helicase subunit XPB: G
BJ4_G0050160.mRNA.1.CDS.1: H
TATA-box-binding protein: I
DNA-directed RNA polymerase subunit: L
DNA-directed RNA polymerase subunit beta: M
DNA-directed RNA polymerase II subunit RPB3: N
DNA-directed RNA polymerase II subunit RPB4: O
DNA-directed RNA polymerases I, II, and III subunit RPABC1: P
DNA-directed RNA polymerases I,II,and III subunit RPABC2: Q
DNA-directed RNA polymerase II subunit RPB7: R
DNA-directed RNA polymerases I, II, and III subunit RPABC3: S
DNA-directed RNA polymerase II subunit RPB9: T
DNA-directed RNA polymerases II subunit RPABC5: U
DNA-directed RNA polymerase II subunit RPB11: V
DNA-directed RNA polymerases II subunit RPABC4: W
Transcription initiation factor IIB: X
Transcription initiation factor IIF subunit alpha: Y
Transcription initiation factor IIF subunit beta: Z
Transcription initiation factor IIA large subunit: 0
Transcription initiation factor IIA subunit 2: 1
Transcription initiation factor IIE subunit alpha: 2
Transcription initiation factor IIE subunit beta: 3
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
4
C
0
D
6
E
2
F
5
G
7
H
3
I
O
L
A
M
B
N
C
O
D
P
E
Q
F
R
G
S
H
T
I
U
J
V
K
W
L
X
M
Y
Q
Z
R
0
U
1
V
2
W
3
X

Tfb1

General transcription and DNA repair factor IIH subunit TFB4

General transcription and DNA repair factor IIH helicase subunit XPD

General transcription and DNA repair factor IIH subunit SSL1

RNA polymerase II transcription factor B subunit 2

General transcription and DNA repair factor IIH subunit TFB5

General transcription and DNA repair factor IIH helicase subunit XPB

BJ4_G0050160.mRNA.1.CDS.1

TATA-box-binding protein

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit RPB4

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I,II,and III subunit RPABC2

DNA-directed RNA polymerase II subunit RPB7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases II subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases II subunit RPABC4

Transcription initiation factor IIB

Transcription initiation factor IIF subunit alpha

Transcription initiation factor IIF subunit beta

Transcription initiation factor IIA large subunit

Transcription initiation factor IIA subunit 2

Transcription initiation factor IIE subunit alpha

Transcription initiation factor IIE subunit beta

Related Entries With Identical Sequence

1dzf.1 | 1i3q.1 | 1i50.1 | 1i50.2 | 1i6h.1 | 1k83.1 | 1nik.1 | 1r5u.1 | 1r9s.1 | 1r9t.1 | 1rm1.1 | 1sfo.1 | 1twa.1 | 1twc.1 | 1twf.1 | 1twf.2 | 1twg.1 | 1twg.2 | 1twg.3 | 1twh.1 | 1wcm.1 | 1y14.1 | 1y14.2 | 1y14.3 | 1y1v.1 | 1y1w.1 | 1y77.1 | 2b63.1 | 2b8k.1 | 2e2h.1  more...