A0A1X3JNN9 (A0A1X3JNN9_ECOLX) Escherichia coli H386
Peptidyl-tRNA hydrolase ArfB UniProtKBInterProInteractive Modelling
140 aa; Sequence (Fasta) ;
5 identical sequences: Escherichia coli: P40711; Shigella sonnei: A0AAE5K2R5; Escherichia coli: A0A024L8R9; Escherichia coli O141:H4: A0ABD7FE17; uncultured bacterium Contig1368: W0FQ04
Available Structures
11 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state |
Heteromer A0A024L8R9; C3SFP7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; | 100 | 387×MG; 2×ZN; 2×NA; | |||
| Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state |
Heteromer A0A024L8R9; A0A0H3ENK5; C3SFP7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; | 100 | 253×MG; 2×ZN; 2×NA; | |||
| Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state |
Heteromer A0A024L8R9; C3SFP7; C3SQR7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR07; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; | 100 | 356×MG; 1×ZN; 1×NA; | |||
| Crystal structure of YAEJ bound to the 70S ribosome |
Heteromer P17291; P35871; P40711; P60405; P60488; P60489; P60490; P60491; P60492; P60493; P60494; P80339; P80340; P80371; P80372; P80373; P80374; P80376; P80377; P80380; Q5SHN3; Q5SHN7; Q5SHN8; Q5SHN9; Q5SHP0; Q5SHP2; Q5SHP3; Q5SHP6; Q5SHP8; Q5SHP9; Q5SHQ0; Q5SHQ4; Q5SHQ5; Q5SHQ6; Q5SHQ7; Q5SHR2; Q5SHZ1; Q5SIH3; Q5SJ76; Q5SJE1; Q5SJH3; Q5SKU1; Q5SLP8; Q5SLQ0; Q5SLQ1; Q9Z9H5; | 100 | 1359×MG; 7×ZN; | |||
| ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) |
Heteromer P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100 | ||||
| ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) |
Heteromer P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100.0 | ||||
| ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) |
Heteromer P02358; P02359; P02413; P0A7J3; P0A7J7; P0A7K6; P0A7L0; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100.0 | ||||
| 70S ribosome stalled on long mRNA with ArfB bound in the A site |
Heteromer P02358; P02359; P02413; P0A7J3; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100 | ||||
| 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) |
Heteromer P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100 | ||||
| Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) |
Heteromer P02358; P02359; P02413; P0A7J3; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P40711; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; | 100 | ||||
| Solution structure of the GGQ domain of YaeJ protein from Escherichia coli | monomer | 100 | ||||
4 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6yss.1.v | monomer | 0.75 | 100.00 | |||
| 7oic.1.m | monomer | 0.62 | 26.56 | |||
| 2jy9.1.A | monomer | 0.57 | 83.45 | |||
| 7jsz.1.u | monomer | 0.56 | 100.00 | |||