P40711 (ARFB_ECOLI) Escherichia coli (strain K12)

Peptidyl-tRNA hydrolase ArfB UniProtKBInterProSTRINGInteractive Modelling

140 aa; Sequence (Fasta) ; 4 identical sequences: Escherichia coli H386: A0A1X3JNN9; Escherichia coli: A0A024L8R9; Escherichia coli O18ac:H14: A0AA92JEC7; uncultured bacterium Contig1368: W0FQ04

Available Structures

11 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state
6ysu
 Heteromer
A0A024L8R9; C3SFP7; C3SQR7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR07; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; 		2-140
356×MG; 1×ZN; 1×NA;
Assess
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
6yst
 Heteromer
A0A024L8R9; A0A0H3ENK5; C3SFP7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; 		2-140
253×MG; 2×ZN; 2×NA;
Assess
Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
6yss
 Heteromer
A0A024L8R9; C3SFP7; C3SQT7; C3SQW2; C3SQX2; C3SQY7; C3SR12; C3SR27; C3SR52; C3SR57; C3SR62; C3SRY2; C3SSQ7; C3STZ7; C3SYP2; C3TPN2; C3TRH7; P02413; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0AG44; P0AG48; P0AG51; P0AG55; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68919; Q8WSY8; 		2-140
387×MG; 2×ZN; 2×NA;
Assess
Crystal structure of YAEJ bound to the 70S ribosome
4v95
 Heteromer
P17291; P35871; P60405; P60488; P60489; P60490; P60491; P60492; P60493; P60494; P80339; P80340; P80371; P80372; P80373; P80374; P80376; P80377; P80380; Q5SHN3; Q5SHN7; Q5SHN8; Q5SHN9; Q5SHP0; Q5SHP2; Q5SHP3; Q5SHP6; Q5SHP8; Q5SHP9; Q5SHQ0; Q5SHQ4; Q5SHQ5; Q5SHQ6; Q5SHQ7; Q5SHR2; Q5SHZ1; Q5SIH3; Q5SJ76; Q5SJE1; Q5SJH3; Q5SKU1; Q5SLP8; Q5SLQ0; Q5SLQ1; Q9Z9H5; 		2-133
1359×MG; 7×ZN;
Assess
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
7jsw
 Heteromer
P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		2-133
Assess
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
7jss
 Heteromer
P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		2-133
Assess
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)
7jsz
 Heteromer
P02358; P02359; P02413; P0A7J3; P0A7J7; P0A7K6; P0A7L0; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		2-133
Assess
70S ribosome stalled on long mRNA with ArfB bound in the A site
7jt2
 Heteromer
P02358; P02359; P02413; P0A7J3; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		2-133
Assess
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
7jt3
 Heteromer
P02358; P02359; P02413; P0A7J3; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		4-133
Assess
70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
7jt1
 Heteromer
P02358; P02359; P02413; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919; 		4-133
Assess
Solution structure of the GGQ domain of YaeJ protein from Escherichia coli
2rtx
monomer1-109
Assess

4 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6yss.1.vmonomer0.752-140
100.00
Assess
7of4.1.nmonomer0.649-124
26.56
Assess
2jy9.1.Amonomer0.571-139
83.45
Assess
7jsz.1.umonomer0.572-133
100.00
Assess