A0A2J8S5U8 (A0A2J8S5U8_PONAB) Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
RTF1 isoform 1 UniProtKBInterProInteractive Modelling
710 aa; Sequence (Fasta) ;
9 identical sequences: Homo sapiens: Q92541; Pan troglodytes: H2Q980, A0A6D2XAX9; Gorilla gorilla gorilla: G3RCG4; Theropithecus gelada: A0A8D2E9E2; Papio anubis: A0A096NTM9; Cercocebus atys: A0A2K5LX58; Nomascus leucogenys: G1QTV7; Rhinopithecus roxellana: A0A2K6RET7
It is possible new templates exist for this target since these models were created.
Available Structures
15 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q08945; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; Q9Y5B9; | 100.0 | 9×ZN; 1×MG; | |||
| Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 8×ZN; 1×MG; | |||
| Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38) |
Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo… |
Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex |
Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; A0A8D0JYF1; A0A8J1LZU9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 12×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27 |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8N7H5; Q8WVC0; Q92541; Q96ST2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 20 bp upstream |
Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TVZ5; A0A4X1VKG7; A0A4X1VTX4; A0A8D0JYF1; A0A8D1DS11; A0A8D1QTB4; F1RKE4; I3LCB2; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q92541; Q96ST2; Q9BYW2; Q9GZS3; | 100.0 | 9×ZN; 1×MG; | |||
| Crystal Structure of Human Rtf1 Plus3 Domain in Complex with Spt5 CTR Phosphopeptide |
Heteromer O00267; Q92541; | 100 | 7×SO4; | |||
| Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain | homo-2-mer | 100.0 | 4×SO4; 1×GOL; 23×UNX; | |||
| NMR Structure of human RTF1 PLUS3 domain. | monomer | 96.4 | ||||
| Solution structure of the plus-3 domain of human KIAA0252 protein | monomer | 100 | ||||
| Crystal Structure of Human Rtf1 Plus3 domain | monomer | 100 | 4×GOL; | |||
2 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6ted.1.Q | monomer | 0.63 | 100.00 | |||
| 6zvs.2.A | monomer | 0.54 | 15.25 | |||