SMTL ID : 6ted.1

Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elongation activation by RTF1

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
9 x ZN: ZINC ION(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Vos, S.M. et al., Structure of complete Pol II-DSIF-PAF-SPT6 transcription complex reveals RTF1 allosteric activation. Nat.Struct.Mol.Biol. (2020)
Release Date
2020-07-22
Peptides
DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
RNA polymerase II subunit C: C
RNA polymerase II subunit D: D
RNA polymerase II subunit E: E
RNA polymerase II subunit F: F
RNA polymerase II subunit G: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
Uncharacterized protein: J
Uncharacterized protein: K
Uncharacterized protein: L
Transcription elongation factor SPT6: M
RNA polymerase-associated protein CTR9 homolog: P
RNA polymerase-associated protein RTF1 homolog: Q
RNA polymerase-associated protein LEO1: S
RNA polymerase II-associated factor 1 homolog: T
WD repeat-containing protein 61: U
Parafibromin: V
Transcription elongation factor SPT4: W
Transcription elongation factor SPT5: X
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
P
Q
Q
R
S
U
T
V
U
W
V
X
W
Y
X
Z

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

RNA polymerase II subunit C

RNA polymerase II subunit D

RNA polymerase II subunit E

RNA polymerase II subunit F

RNA polymerase II subunit G

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

Uncharacterized protein

Uncharacterized protein

Uncharacterized protein

Transcription elongation factor SPT6

RNA polymerase-associated protein CTR9 homolog

RNA polymerase-associated protein RTF1 homolog

RNA polymerase-associated protein LEO1

RNA polymerase II-associated factor 1 homolog

WD repeat-containing protein 61

Parafibromin

Transcription elongation factor SPT4

Transcription elongation factor SPT5

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2c35.1 | 2c35.2 | 2c35.3 | 2c35.4 | 2f3i.1 | 5flm.1 | 5iy6.1 | 5iy7.1 | 5iy8.1 | 5iy9.1 | 5iya.1 | 5iyb.1 | 5iyc.1 | 5iyd.1 | 5oik.1 | 6drd.1 | 6exv.1 | 6gmh.1 | 6gml.1 | 6o9l.1 | 6xre.1 | 7a6h.1 | 7ae1.1 | 7ae3.1 | 7aea.1 | 7ast.1 | 7b0y.1 | 7b7u.1 | 7d58.1 | 7d59.1  more...