A0A345IJH4 | SWISS-MODEL Repository

A0A345IJH4 (A0A345IJH4_9DEIO) Deinococcus wulumuqiensis

Large ribosomal subunit protein uL16 UniProtKB InterPro STRING Interactive Modelling

141 aa; Sequence (Fasta) ; 2 identical sequences: Deinococcus reticulitermitis: A0A1H7BQP7; Deinococcus radiodurans: Q9RXJ5

It is possible new templates exist for this target since these models were created.

Available Structures

27 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans	5dm6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSS8; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	198×MG;
Download Compare Structure Assessment
Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans	2zjr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	35×MG;
Download Compare Structure Assessment
Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromy…	5dm7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSS8; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	186×MG; 1×HGR;
Download Compare Structure Assessment
Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans	4io9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	35×MG; 1×1F2;
Download Compare Structure Assessment
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans	4ioa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	35×MG; 1×1F3;
Download Compare Structure Assessment
Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the …	3pio PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	1×LMA; 154×MG; 42×NA; 15×K;
Download Compare Structure Assessment
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans	3cf5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C8P8; P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	36×MG;
Download Compare Structure Assessment
Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit	2zjq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RST0; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100
Download Compare Structure Assessment
50S Deinococcus radiodurans ribosome bounded with mycinamicin I	7a0r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	1×QTZ; 345×MG;
Download Compare Structure Assessment
RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans	1y69 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0A805; Q9RXJ5; Q9RY65;	5-140	100
Download Compare Structure Assessment
The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycin	5jvg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	1×6NO; 446×MG; 5×MPD; 3×SPD;
Download Compare Structure Assessment
Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the …	3pip PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	1×LC2; 1×LMA; 73×MG; 4×K; 5×NA;
Download Compare Structure Assessment
The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA pos…	3dll PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	35×MG; 1×ZLD; 2×ZN;
Download Compare Structure Assessment
Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a thre…	4wfn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	70×MG; 1×ERY;
Download Compare Structure Assessment
The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with ever…	5jvh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	1×6O1; 123×MG;
Download Compare Structure Assessment
Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans	4ioc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	35×MG; 1×1F4;
Download Compare Structure Assessment
Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a thre…	4u67 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	51×MG;
Download Compare Structure Assessment
Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans	2zjp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C6FX52; P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-140	100	2×ZN; 1×NO1; 35×MG;
Download Compare Structure Assessment
50S Deinococcus radiodurans ribosome bounded with mycinamicin I	7a0s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-139	100	1×QU2; 367×MG; 8×SPD; 4×MPD; 1×NA; 1×EOH; 5×CA; 1×K;
Download Compare Structure Assessment
50S Deinococcus radiodurans ribosome bounded with mycinamicin IV	7a18 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RRG8; Q9RSH2; Q9RSJ5; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSW6; Q9RSW7; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY64; Q9RY65;	5-138	100	1×MIV; 277×MG; 7×SPD;
Download Compare Structure Assessment
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans	1nkw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65;	7-130	100
Download Compare Structure Assessment
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN	1nwy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65;	7-130	100	2×ZIT;
Download Compare Structure Assessment
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRIS…	1sm1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65;	7-130	100	1×DOL;
Download Compare Structure Assessment
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed wit…	1njp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9RX88; Q9RXJ5;	7-130	100
Download Compare Structure Assessment
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773	1nwx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65;	7-130	100	1×773;
Download Compare Structure Assessment
Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit …	1xbp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P49228; Q9RSH2; Q9RSJ5; Q9RSK0; Q9RSK9; Q9RSL0; Q9RSL2; Q9RSL3; Q9RSS4; Q9RSS7; Q9RSW6; Q9RSW7; Q9RW44; Q9RWB4; Q9RX88; Q9RXJ0; Q9RXJ1; Q9RXJ2; Q9RXJ4; Q9RXJ5; Q9RXJ7; Q9RXJ9; Q9RXK0; Q9RXK1; Q9RXK2; Q9RXY1; Q9RY49; Q9RY64; Q9RY65;	7-130	100	1×MUL;
Download Compare Structure Assessment
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed wit…	1njm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9RX88; Q9RXJ5;	7-130	100	1×SPS;
Download Compare Structure Assessment

1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4v9r.1.9	monomer	0.76	1-141		75.89
	Download ModelCIF format PDB format Model report Compare Structure Assessment

	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A345IJH4 (A0A345IJH4_9DEIO) Deinococcus wulumuqiensis

Large ribosomal subunit protein uL16 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

27 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Large ribosomal subunit protein uL16 UniProtKB InterPro STRING Interactive Modelling