SMTL ID : 1nwy.1

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZIT: AZITHROMYCIN(Non-functional Binders)(Non-covalent)

ZIT.1: 9 residues within 4Å: Chain A: A.2041, A.2042, A.2045, A.2482, G.2484, C.2565, U.2588, C.2589 Ligands: ZIT.2 Protein-ligand interaction information (PLIP) not available ZIT.2: 5 residues within 4Å: Chain A: A.764, C.803 Chain E: Y.58, G.62 Ligands: ZIT.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schlunzen, F. et al., Structural basis for the antibiotic activity of ketolides and azalides. Structure (2003)

Release Date

2003-03-18

Peptides

ribosomal protein L2: C
ribosomal protein L3: D
ribosomal protein L4: E
ribosomal protein L5: F
ribosomal protein L6: G
ribosomal protein L9: H
ribosomal protein L11: I
ribosomal protein L13: J
ribosomal protein L14: K
ribosomal protein L15: L
ribosomal protein L16: M
ribosomal protein L17: N
ribosomal protein L18: O
ribosomal protein L19: P
ribosomal protein L20: Q
ribosomal protein L21: R
ribosomal protein L22: S
ribosomal protein L23: T
ribosomal protein L24: U
general stress protein Ctc: V
ribosomal protein L27: W
ribosomal protein L29: X
ribosomal protein L30: Y
ribosomal protein L31: Z
ribosomal protein L32: 0
ribosomal protein L33: 1
ribosomal protein L34: 2
ribosomal protein L35: 3
ribosomal protein L36: 4

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

E
C

F
D

G
E

H
F

I
G

J
H

K
I

L
J

M
K

N
L

O
M

P
N

Q
O

R
P

S
Q

T
R

U
S

V
T

W
U

X
W

Y
X

Z
Y

0
Z

1
1

2
2

3
3

4
4

ribosomal protein L2

ribosomal protein L3

ribosomal protein L4

ribosomal protein L5

ribosomal protein L6

ribosomal protein L9

ribosomal protein L11

ribosomal protein L13

ribosomal protein L14

ribosomal protein L15

ribosomal protein L16

ribosomal protein L17

ribosomal protein L18

ribosomal protein L19

ribosomal protein L20

ribosomal protein L21

ribosomal protein L22

ribosomal protein L23

ribosomal protein L24

general stress protein Ctc

ribosomal protein L27

ribosomal protein L29

ribosomal protein L30

ribosomal protein L31

ribosomal protein L32

ribosomal protein L33

ribosomal protein L34

ribosomal protein L35

ribosomal protein L36

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