A1AGH8 (DEF_ECOK1) Escherichia coli O1:K1 / APEC

Peptide deformylase UniProtKBInterProInteractive Modelling

169 aa; Sequence (Fasta) ; 137 identical sequences

Available Structures

32 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into th… Heteromer
F4VAM2; F4VJS7;
2-169
Assess
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and tr… Heteromer
P02358; P02359; P02413; P0A6K3; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7M9; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0A850; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919;
2-169
Assess
Crystal structure of E. coli peptide deformylase and methionine aminopeptidase fitted into the cryo… Heteromer
P0A6K3; P0AE18;
2-169
Assess
Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigg… Heteromer
P02358; P02359; P02413; P0A6K3; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M2; P0A7M6; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7S9; P0A7T3; P0A7T7; P0A7U3; P0A7U7; P0A7V0; P0A7V3; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0A850; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919;
2-169
Assess
Structure of PDF binding helix in complex with the ribosome Heteromer
P02358; P02359; P02413; P0A6K3; P0A7J7; P0A7K6; P0A7L3; P0A7L8; P0A7M6; P0A7M9; P0A7N4; P0A7N9; P0A7P5; P0A7Q1; P0A7Q6; P0A7R1; P0A7R5; P0A7R9; P0A7S3; P0A7T1; P0A7T3; P0A7T9; P0A7U3; P0A7U7; P0A7V1; P0A7V4; P0A7V8; P0A7W1; P0A7W7; P0A7X3; P0AA10; P0ADY3; P0ADY7; P0ADZ0; P0ADZ4; P0AG44; P0AG48; P0AG51; P0AG55; P0AG59; P0AG63; P0C018; P60422; P60438; P60624; P60723; P61175; P62399; P68679; P68919;
147-162
170×MG;
Assess
PDF PROTEIN IS CRYSTALLIZED AS NI2+ CONTAINING FORM, COCRYSTALLIZED WITH INHIBITOR POLYETHYLENE GLY…homo-3-mer2-169
NI;2PE;SO4;
Assess
PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORM (NATIVE) IN COMPLEX WITH INHIBITOR POLYETHYLENE GLYCOLmonomer2-169
ZN;2PE;
Assess
PEPTIDE DEFORMYLASE AS FE2+ CONTAINING FORM (NATIVE) IN COMPLEX WITH INHIBITOR POLYETHYLENE GLYCOLmonomer2-169
FE;2PE;
Assess
PEPTIDE DEFORMYLASE AS NI2+ CONTAINING FORM IN COMPLEX WITH TRIPEPTIDE MET-ALA-SERmonomer2-169
NI;
Assess
PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORM IN COMPLEX WITH TRIPEPTIDE MET-ALA-SERmonomer2-169
ZN;
Assess
PEPTIDE DEFORMYLASE AS NI2+ CONTAINING FORMmonomer2-169
NI;
Assess
PEPTIDE DEFORMYLASE AS ZN2+ CONTAINING FORMmonomer2-169
ZN;
Assess
E. coli peptide deformylase crystal structure fitted into the cryo-EM density map of E. coli 70S ri…monomer2-169
Assess
Chloro complex of the Ni-Form of E.coli deformylasemonomer2-168
NI;CL;EOH;
Assess
E.coli Polypeptide Deformylase complexed with SB-485343monomer2-167
NI;SB7;
Assess
COBALT DEFORMYLASE INHIBITOR COMPLEX FROM E.COLImonomer2-167
CO;PO4;MLN;
Assess
ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLImonomer2-167
ZN;PO4;MLN;
Assess
High Resolution Crystals Structure of Cobalt- Peptide Deformylase Bound To Formatemonomer2-166
CO;FMT;
Assess
High Resolution Crystal Structure of Escherichia coli Iron- Peptide Deformylase Bound To Formatemonomer2-166
FE;FMT;
Assess
formate complex of the Ni-Form of E.coli deformylasemonomer2-166
NI;FMT;
Assess
THE CRYSTAL STRUCTURE OF E.COLI PEPTIDE DEFORMYLASE COMPLEXED WITH ACTINONINmonomer2-165
NI;BB2;
Assess
High Resolution Crystal Structure of Escherichia coli Zinc- Peptide Deformylase bound to formatemonomer2-165
ZN; 10×FMT;
Assess
CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE DEFORMYLASE COMPLEXED WITH THE INHIBITOR BB-3497monomer2-165
NI;BB1;
Assess
Crystal Structure of E.coli Peptide Deformylase Complexed with Antibiotic Actinoninmonomer2-165
ZN;BB2;
Assess
The structure of E.coli peptide deformylase (PDF) in complex with peptidomimetic ligand BB2827monomer2-165
NI;2BB;
Assess
PEPTIDE DEFORMYLASEmonomer2-165
ZN;
Assess
E.coli deformylase with Co(II) and hydrosulfidemonomer2-164
CO;H2S;
Assess
peptide deformylase (Co-form) with mercaptoethanolmonomer2-163
CO;CL;BME;
Assess
peptide deformylase (Ni-form) with hydrosulfidemonomer2-163
NI;H2S;
Assess
Solution structure of peptide deformylase complexed with actinoninmonomer2-148
ZN;BB2;
Assess
PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 9 STRUCTURESmonomer2-148
ZN;
Assess
PEPTIDE DEFORMYLASE CATALYTIC CORE (RESIDUES 1-147), NMR, 20 STRUCTURESmonomer3-148
NI;
Assess

1 SWISS-MODEL model

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2ai8.1.Amonomer0.862-167
NI;SB7;100.00
Assess