SMTL ID : 1bsk.1

ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.50, C.90, H.132, H.136 Ligands: MLN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.90, A:H.132, A:H.136

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: P.9, D.10, E.11, R.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.10 Salt bridges: A:R.14

1 x MLN: (S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE(Non-covalent)

MLN.3: 18 residues within 4Å: Chain A: E.42, G.43, I.44, G.45, Q.50, I.86, E.87, E.88, G.89, C.90, L.91, R.97, L.125, C.129, H.132, E.133, H.136 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.44, A:I.86, A:E.88, A:L.125 Hydrogen bonds: A:I.44, A:G.45, A:Q.50, A:G.89, A:G.89, A:L.91 Salt bridges: A:H.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, B. et al., Structural basis for the design of antibiotics targeting peptide deformylase. Biochemistry (1999)

Release Date

2000-04-15

Peptides

PROTEIN (PEPTIDE DEFORMYLASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (PEPTIDE DEFORMYLASE)

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