A6ZVS8 | SWISS-MODEL Repository

A6ZVS8 (A6ZVS8_YEAS7) Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)

U2 snRNP component UniProtKB InterPro Interactive Modelling

111 aa; Sequence (Fasta) ; 6 identical sequences: Saccharomyces cerevisiae: N1P1S1, G2WGF5, C7GJG3, P40567, B3LTK0; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GI26

It is possible new templates exist for this target since these models were created.

Available Structures

20 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Post-catalytic P complex spliceosome with 3' splice site docked	6exn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24384; P25337; P28004; P28320; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	24-110	100	1×MG; 1×IHP; 1×GTP; 7×ZN;
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Structure of the yeast post-catalytic P complex spliceosome at 2.3 Angstrom resolution	9dtr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P38302; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53913; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	26-111	100	2×MG; 4×K; 2×IHP; 1×GTP; 7×ZN;
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Structure of a spliceosome remodeled for exon ligation	5mq0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	3×MG; 2×K; 1×IHP; 1×GTP; 6×ZN;
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Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1)	7oqe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C074; P19736; P21372; P32524; P32605; P33203; P39682; P40018; P40204; P40567; P43321; P49955; P53207; P54999; Q00539; Q00916; Q02260; Q02554; Q03776; Q03782; Q04693; Q05900; Q06217; Q06835; Q07350; Q07508; Q08963; Q12330; Q99181;	28-111	100
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Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom	6j6g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	1×IHP; 1×GTP; 6×MG; 6×ZN;
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Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom	6j6h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	1×IHP; 1×GTP; 6×MG; 6×ZN;
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Structure of a pre-catalytic spliceosome	5nrl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A6ZYX7; P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40567; P43321; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06217; Q06819; Q06835; Q07350; Q08963; Q12330; Q12368; Q12420; Q99181;	28-111	100	1×GTP; 7×ZN;
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Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom	6j6n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	1×IHP; 1×GTP; 6×MG; 6×ZN;
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Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2)	6g90 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C074; P19736; P32524; P32605; P39682; P40018; P40204; P40567; P43321; P49955; P53207; P54999; Q00539; Q00916; Q02260; Q02554; Q03776; Q03782; Q04693; Q05900; Q06217; Q06835; Q07350; Q07508; Q08963; Q12330; Q99181;	28-111	100	9×ZN;
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S. cerevisiae spliceosomal post-catalytic P complex	6bk8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	5×MG; 1×IHP; 1×GTP; 7×ZN;
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The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1)	7oqb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C074; P19736; P21372; P32524; P40018; P40204; P40567; P43321; P49955; P54999; Q02260; Q02554; Q04693; Q06217; Q06835; Q07350; Q08963; Q12330; Q99181;	28-111	100
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Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom	6j6q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	1×IHP; 1×GTP; 6×MG; 7×ZN;
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Structure of the core of the yeast spliceosome immediately after branching	5lj3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P28320; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	2×MG; 7×ZN; 1×GTP;
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Overall structure of the yeast spliceosome immediately after branching.	5lj5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15938; P21374; P25337; P28004; P28320; P32523; P32639; P33334; P36048; P38241; P40018; P40204; P40567; P43321; P53854; P54999; Q02260; Q03375; Q03654; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	28-111	100	2×MG; 7×ZN; 1×GTP;
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Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution	5gmk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21374; P25337; P28004; P28320; P32523; P33334; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P53854; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	29-111	100.0	1×GTP; 6×MG; 7×ZN;
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Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 a…	5y88 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P25337; P28004; P28320; P32523; P33334; P36048; P36118; P38241; P40018; P40204; P40567; P40968; P43321; P52868; P53131; P53277; P54999; Q02260; Q03654; Q03772; Q04048; Q06091; Q06217; Q06411; Q08963; Q12046; Q12309; Q12330; Q12417;	29-111	100.0	1×IHP; 1×GTP; 6×MG; 6×ZN;
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Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom	5ylz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24384; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q02775; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	29-111	100.0	1×IHP; 1×GTP; 6×MG; 6×ZN;
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Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution	5wsg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15938; P25337; P28004; P32523; P33334; P33411; P36048; P38241; P40018; P40204; P40567; P40968; P43321; P53277; P53333; P54999; Q02260; Q03375; Q03654; Q03772; Q04048; Q06091; Q06217; Q08963; Q12046; Q12309; Q12330; Q12417;	29-111	100.0	1×GTP; 6×MG; 6×ZN;
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Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRN…	5zwm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q02260; Q02554; Q03338; Q04693; Q06217; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12420; Q99181;	29-103	100.0	1×GTP; 1×MG; 6×ZN;
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Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom	5zwo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0C074; P19735; P19736; P20053; P32524; P32639; P33334; P36048; P38203; P38282; P39990; P40018; P40070; P40089; P40204; P40565; P40567; P43321; P46947; P47093; P49704; P49955; P53905; P54999; P57743; Q00723; Q02260; Q02554; Q03338; Q04693; Q06217; Q06406; Q06819; Q06835; Q07350; Q07930; Q08963; Q12330; Q12368; Q12420; Q99181;	29-103	100.0	1×GTP; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7b9v.1.Z	monomer	0.81	24-111		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A6ZVS8 (A6ZVS8_YEAS7) Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)

U2 snRNP component UniProtKBInterProInteractive Modelling

Available Structures

20 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

U2 snRNP component UniProtKB InterPro Interactive Modelling