SMTL ID : 5lj5.1

Overall structure of the yeast spliceosome immediately after branching.

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 3.80 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-2-2-1-1-1-4-1-1-mer
Ligands
2 x MG: MAGNESIUM ION(Non-functional Binders)
7 x ZN: ZINC ION(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Galej, W.P. et al., Cryo-EM structure of the spliceosome immediately after branching. Nature (2016)
Release Date
2016-08-31
Peptides
Pre-mRNA-splicing factor 8: F
Pre-mRNA-splicing helicase BRR2: G
Protein CWC16: H
Pre-mRNA-splicing factor CWC25: I
Pre-mRNA-splicing factor SNU114: J
Pre-mRNA-splicing factor ISY1: K
CWC22: L
Pre-mRNA-splicing factor PRP46: M
Pre-mRNA-processing protein 45: N
Pre-mRNA-splicing factor BUD31: O
Pre-mRNA-splicing factor CWC2: P
Pre-mRNA-splicing factor SLT11: Q
Pre-mRNA-splicing factor CEF1: R
CWC15: S
Pre-mRNA-splicing factor CWC21: T
Pre-mRNA-splicing factor CLF1: U
Pre-mRNA-splicing factor SYF1: V
Small nuclear ribonucleoprotein-associated protein B: W5
Small nuclear ribonucleoprotein Sm D3: X8
Small nuclear ribonucleoprotein E: Y9
Small nuclear ribonucleoprotein F: Za
Small nuclear ribonucleoprotein G: 0b
Small nuclear ribonucleoprotein Sm D1: 16
Small nuclear ribonucleoprotein Sm D2: 27
U2 small nuclear ribonucleoprotein A': 3
U2 small nuclear ribonucleoprotein B'': 4
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16: c
Pre-mRNA-processing factor 19: defg
Pre-mRNA-splicing factor SNT309: h
unknown: i
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
F
A
G
B
H
D
I
F
J
C
K
G
L
H
M
J
N
K
O
L
P
M
Q
N
R
O
S
P
T
R
U
S
V
T
W
b
5
k
X
d
8
n
Y
e
9
p
Z
f
a
q
0
g
b
r
1
h
6
l
2
j
7
m
3
W
4
Y
c
Q
d
t
e
u
f
v
g
w
h
s
i
x

Pre-mRNA-splicing factor 8

Pre-mRNA-splicing helicase BRR2

Protein CWC16

Pre-mRNA-splicing factor CWC25

Pre-mRNA-splicing factor SNU114

Pre-mRNA-splicing factor ISY1

CWC22

Pre-mRNA-splicing factor PRP46

Pre-mRNA-processing protein 45

Pre-mRNA-splicing factor BUD31

Pre-mRNA-splicing factor CWC2

Pre-mRNA-splicing factor SLT11

Pre-mRNA-splicing factor CEF1

CWC15

Pre-mRNA-splicing factor CWC21

Pre-mRNA-splicing factor CLF1

Pre-mRNA-splicing factor SYF1

Small nuclear ribonucleoprotein-associated protein B

Toggle Identical (W5)

Small nuclear ribonucleoprotein Sm D3

Toggle Identical (X8)

Small nuclear ribonucleoprotein E

Toggle Identical (Y9)

Small nuclear ribonucleoprotein F

Toggle Identical (Za)

Small nuclear ribonucleoprotein G

Toggle Identical (0b)

Small nuclear ribonucleoprotein Sm D1

Small nuclear ribonucleoprotein Sm D2

Toggle Identical (27)

U2 small nuclear ribonucleoprotein A'

U2 small nuclear ribonucleoprotein B''

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16

Pre-mRNA-processing factor 19

Pre-mRNA-splicing factor SNT309

unknown

Related Entries With Identical Sequence

3jcm.1 | 5gam.1 | 5gan.1 | 5gao.1 | 5gap.1 | 5gm6.1 | 5gmk.1 | 5lj3.1 | 5m52.1 | 5m52.2 | 5mps.1 | 5mq0.1 | 5nrl.1 | 5wsg.1 | 5y88.1 | 5ylz.1 | 5zwm.1 | 5zwn.1 | 5zwo.1 | 6bk8.1 | 6exn.1 | 6g90.1 | 6j6g.1 | 6j6h.1 | 6j6n.1 | 6j6q.1 | 6n7x.1