B3LJV9 | SWISS-MODEL Repository

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B3LJV9 (B3LJV9_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)

Ribosome biogenesis regulatory protein UniProtKB InterPro Interactive Modelling

203 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: N1NWX7, G2WNG0, C7GNW7, Q08746, A6ZPC9; Saccharomyces pastorianus: A0A6C1E252; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GNZ7

It is possible new templates exist for this target since these models were created.

Available Structures

15 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-201	100	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-201	100	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-201	100	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-201	100	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7oht PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05744; P0C0W9; P0CX23; P0CX41; P0CX49; P10664; P14126; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P40078; P53742; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522;	9-201	100.0	2×MG; 1×ZN;
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Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	7ug6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q08746; Q12522; Q12690;	9-201	100.0	1×GDP; 1×MG;
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Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	7ohq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690;	9-201	100.0	2×MG; 3×ZN;
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Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	7oh3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P49166; P49167; P53188; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690;	9-201	100.0	2×MG; 3×ZN;
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Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…	6m62 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	9-201	100.0	4×ZN; 2×GTP; 2×MG;
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Cryo-em structure of eukaryotic pre-60S ribosomal subunits	3jct PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	9-201	100.0	4×ZN; 2×GTP; 2×MG;
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Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 A…	7bt6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12522; Q12690;	9-201	100.0	2×GTP; 2×MG; 3×ZN;
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Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 A…	7btb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690;	9-201	100.0	2×GTP; 2×MG; 3×ZN;
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Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	6ft6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38801; P40010; P40078; P47047; P49166; P49167; P53188; P53261; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12149; Q12522; Q12690;	9-201	100.0	4×ZN; 2×GTP; 2×MG;
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Crystal Structure of the Rpf2-Rrs1 complex	5a53 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P36160; Q08746;	9-106	100	4×SO4;
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Crystal structure of the Rrs1 and Rpf2 complex	5wxl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P36160; Q08746;	20-106	100.0
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7uoo.1.t	monomer	0.76	8-201		100.00
	Download ModelCIF format PDB format Model report Compare Structure Assessment

	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

B3LJV9 (B3LJV9_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)

Ribosome biogenesis regulatory protein UniProtKBInterProInteractive Modelling

Available Structures

15 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Ribosome biogenesis regulatory protein UniProtKB InterPro Interactive Modelling