SMTL ID : 3jct.1

Cryo-em structure of eukaryotic pre-60S ribosomal subunits

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-oligomer
Ligands
4 x ZN: ZINC ION(Non-covalent)
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Wu, S. et al., Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes. Nature (2016)
Release Date
2016-06-01
Peptides
60S ribosomal protein L2-A: A
60S ribosomal protein L3: B
60S ribosomal protein L4-A: C
60S ribosomal protein L5: D
60S ribosomal protein L6-A: E
60S ribosomal protein L7-A: F
60S ribosomal protein L8-A: G
60S ribosomal protein L9-A: H
Bud site selection protein 20: I
60S ribosomal protein L11-A: J
Proteasome-interacting protein CIC1: K
60S ribosomal protein L13-A: L
60S ribosomal protein L14-A: M
60S ribosomal protein L15-A: N
60S ribosomal protein L16-A: O
60S ribosomal protein L17-A: P
60S ribosomal protein L18-A: Q
60S ribosomal protein L19-A: R
60S ribosomal protein L20-A: S
60S ribosomal protein L21-A: T
60S ribosomal protein L22-A: U
60S ribosomal protein L23-A: V
Ribosome assembly factor MRT4: W
60S ribosomal protein L25: X
60S ribosomal protein L26-A: Y
60S ribosomal protein L27-A: Z
60S ribosomal protein L28: 0
Nucleolar GTP-binding protein 1: 1
60S ribosomal protein L30: 2
60S ribosomal protein L31-A: 3
60S ribosomal protein L32: 4
60S ribosomal protein L33-A: 5
60S ribosomal protein L34-A: 6
60S ribosomal protein L35-A: 7
60S ribosomal protein L36-A: 8
60S ribosomal protein L37-A: 9
60S ribosomal protein L38: a
60S ribosomal protein L39: b
Nucleolar GTP-binding protein 2: c
Pescadillo homolog: d
Ribosome biogenesis protein 15: e
60S ribosomal protein L43-A: f
Ribosome biogenesis protein NOP53: g
Ribosome biogenesis protein NSA2: h
Nuclear GTP-binding protein NUG1: i
Ribosome biogenesis protein RLP7: j
Ribosome biogenesis protein RLP24: k
Ribosome biogenesis protein RPF2: l
Regulator of ribosome biosynthesis: m
Ribosome assembly protein 4: n
Eukaryotic translation initiation factor 6: o
UPF0642 protein YBL028C: p
Probable metalloprotease ARX1: t
rRNA-processing protein CGR1: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
0
a
1
b
2
c
3
d
4
e
5
f
6
g
7
h
8
i
9
j
a
k
b
l
c
m
d
n
e
o
f
p
g
q
h
r
i
s
j
t
k
u
l
v
m
w
n
x
o
y
p
z
t
4
u
5

60S ribosomal protein L2-A

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L5

60S ribosomal protein L6-A

60S ribosomal protein L7-A

60S ribosomal protein L8-A

60S ribosomal protein L9-A

Bud site selection protein 20

60S ribosomal protein L11-A

Proteasome-interacting protein CIC1

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L23-A

Ribosome assembly factor MRT4

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L27-A

60S ribosomal protein L28

Nucleolar GTP-binding protein 1

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

60S ribosomal protein L39

Nucleolar GTP-binding protein 2

Pescadillo homolog

Ribosome biogenesis protein 15

60S ribosomal protein L43-A

Ribosome biogenesis protein NOP53

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP7

Ribosome biogenesis protein RLP24

Ribosome biogenesis protein RPF2

Regulator of ribosome biosynthesis

Ribosome assembly protein 4

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

Probable metalloprotease ARX1

rRNA-processing protein CGR1

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1t0k.1 | 2ww9.1 | 2wwa.1 | 2wwb.1 | 3j16.1 | 3j2i.2 | 3j6x.2 | 3j6x.3 | 3j6x.4 | 3j6x.5 | 3j6x.6 | 3j6x.7 | 3j6x.8 | 3j6x.9 | 3j6x.11 | 3j6x.12 | 3j6x.13 | 3j6x.14 | 3j6x.15 | 3j6x.16 | 3j6x.17 | 3j6x.18 | 3j6x.19 | 3j6x.20 | 3j6x.21 | 3j6x.22 | 3j6x.24 | 3j6x.25 | 3j6x.26 | 3j6x.27  more...