C7GRU7 | SWISS-MODEL Repository

C7GRU7 (C7GRU7_YEAS2) Saccharomyces cerevisiae (strain JAY291) (Baker's yeast)

Rfc4p UniProtKB InterPro Interactive Modelling

323 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: N1NXM2, G2WME1, C8ZHM1, P40339, B5VRG1, A6ZNB6; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GN34

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2025-05-08. The outcome - failed for technical reasons.

Available Structures

44 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to two DNA molecules, o…	7tfh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-323	100	4×AGS; 4×MG; 1×ADP;
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Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with an open cla…	7tfi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-323	100	4×AGS; 4×MG; 1×ADP;
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Atomic model of S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with a closed clamp …	7tfj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-323	100	4×AGS; 4×MG; 1×ADP;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 5-nt gapped DNA (9-1-1 encircli…	8fs8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	5-323	100	4×AGS; 4×MG; 1×ADP;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 4 (par…	8fs6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	5-323	100	4×AGS; 4×MG; 1×ADP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the sliding clamp (Prolifer…	7tid PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-322	100	4×AGS; 4×MG; 1×ADP;
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Atomic model of S. cerevisiae clamp loader RFC bound to two DNA molecules, one at the 5'-recessed e…	7tfk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P38251; P38629; P38630; P40339; P40348;	5-323	100	4×AGS; 4×MG; 1×ADP;
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Atomic model of S. cerevisiae clamp loader RFC bound to DNA	7tfl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P38251; P38629; P38630; P40339; P40348;	5-323	100	4×AGS; 4×MG; 1×ADP;
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RFC:PCNA bound to DNA with a ssDNA gap of five nucleotides	7u1p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-322	100	3×AGS; 4×MG; 2×ADP;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 5 (clo…	8fs7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	5-323	100	4×MG; 4×AGS; 1×ADP;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 1 (ope…	8fs3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	5-323	100	4×MG; 4×AGS; 1×ADP;
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Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I	8tw8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P40339; P40348; P49956;	4-322	100	3×AGS; 3×MG; 1×ADP;
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RFC:PCNA bound to nicked DNA	7u19 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-322	100	4×AGS; 4×MG; 1×ADP;
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RFC:PCNA bound to dsDNA with a ssDNA gap of six nucleotides	7u1a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-322	100	3×AGS; 4×MG; 2×ADP;
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Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-PolE-DNA complex	8twa PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P21951; P25559; P38251; P38629; P38877; P40339; P40348; P49956;	4-322	100	1×SF4; 3×AGS; 3×MG; 1×ADP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the open sliding clamp (Pro…	7tib PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-322	100	4×AGS; 4×MG; 1×ADP;
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Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA-DNA complex	8twb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P40339; P40348; P49956;	4-322	100	3×AGS; 3×MG; 1×ADP;
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Closed state of RFC:PCNA bound to a nicked dsDNA	8dr6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×ADP;
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Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction	8dr0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to PCNA	8thd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P40339; P40348; Q12050;	6-323	100	4×AGS; 3×MG; 1×ADP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the open sliding clamp (Pro…	7tku PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	5-322	100	4×AGS; 4×MG; 1×ADP;
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Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction	8dqz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD	8dr3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) without NTD	8dr4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Open state of RFC:PCNA bound to a nicked dsDNA	8dr7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Consensus closed state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2)	8dr1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×AGS; 4×MG; 1×GDP;
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Open state of RFC:PCNA bound to a 3' ss/dsDNA junction (DNA2) with NTD	8dr5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	4-321	100	4×MG; 4×AGS; 1×GDP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the open sliding clamp (Pro…	7ti8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	5-322	100	4×AGS; 4×MG; 1×ADP;
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Structure of the Saccharomyces cerevisiae PCNA clamp unloader Elg1-RFC complex	8thb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P38251; P38629; P40339; P40348; Q12050;	6-323	100	4×AGS; 3×MG; 1×ADP;
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Structure of the Saccharomyces cerevisiae clamp unloader Elg1-RFC bound to a cracked PCNA	8thc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P40339; P40348; Q12050;	6-323	100	4×AGS; 3×MG; 1×ADP;
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Structure of the yeast Rad24-RFC loader bound to DNA and the closed 9-1-1 clamp	7sgz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	7-323	100	4×AGS; 4×MG; 1×ADP; 1×PO4;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 2 (ope…	8fs4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	6-322	100.0	4×AGS; 4×MG; 1×ADP;
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Structure of the yeast Rad24-RFC loader bound to DNA and the open 9-1-1 clamp	7sh2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	7-323	100	4×AGS; 4×MG; 1×ADP;
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Structure of S. cerevisiae Rad24-RFC loading the 9-1-1 clamp onto a 10-nt gapped DNA in step 3 (ope…	8fs5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	6-322	100	4×AGS; 4×MG; 1×ADP;
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Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Slidi…	1sxj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	7-322	99.68	4×MG; 4×AGS; 1×ADP;
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Rad24-RFC ADP state	7ste PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348;	7-321	100	4×ADP; 1×ATP; 1×MG;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the sliding clamp (Prolifer…	7thj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	8-322	100	4×AGS; 4×MG; 1×ADP;
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Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction	8dqw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	7-321	100	4×MG; 4×AGS; 1×GDP;
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Open state of RFC:PCNA bound to a 3' ss/dsDNA junction	8dqx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	7-321	100	4×AGS; 4×MG; 1×GDP;
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Cryo-EM structure of S. cerevisiae Ctf18-RFC-PCNA complex in Apo state conformation I	8tw7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P40339; P40348; P49956;	8-322	100	1×ADP; 3×AGS; 3×MG;
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Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction	7st9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	7-321	100	4×AGS; 4×MG; 1×GLU; 1×THR; 1×ADP;
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Closed state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction	7stb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32641; P38251; P38629; P40339; P40348; P48581; Q02574; Q08949;	7-321	100	4×AGS; 4×MG; 1×ADP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the sliding clamp (Prolifer…	7thv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	8-321	100	4×AGS; 4×MG; 1×ADP;
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Structure of the yeast clamp loader (Replication Factor C RFC) bound to the sliding clamp (Prolifer…	7tic PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P15873; P38251; P38629; P38630; P40339; P40348;	8-321	100	4×AGS; 4×MG; 1×ADP;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8dr3.1.B	monomer	0.89	4-321	100.00
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3glh.3.B	monomer	0.67	8-320	18.01
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8unh.1.B	monomer	0.61	1-320	24.75
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

C7GRU7 (C7GRU7_YEAS2) Saccharomyces cerevisiae (strain JAY291) (Baker's yeast)

Rfc4p UniProtKBInterProInteractive Modelling

Available Structures

44 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

Rfc4p UniProtKB InterPro Interactive Modelling