O76021 | SWISS-MODEL Repository

O76021 (RL1D1_HUMAN) Homo sapiens (Human)

Ribosomal L1 domain-containing protein 1 UniProtKB InterPro STRING Interactive Modelling

490 aa; Sequence (Fasta) ; (Isoform 2); 1 identical sequence: Pongo abelii: Q5RCE6

Available Structures

19 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Human nucleolar pre-60S ribosomal subunit (State C1)	8fkt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P50914; P56182; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62906; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q6RFH5; Q8IY81; Q8TDD1; Q8TDN6; Q99848; Q9BRT6; Q9BVP2; Q9BXY0; Q9BYG3; Q9BZE4; Q9H9Y2; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3U8;	30-272	100	64×MG; 2×ZN; 1×ADP; 1×SF4; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State D1)	8fkv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P50914; P56182; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62899; P62906; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q6RFH5; Q8IY81; Q8TDD1; Q8TDN6; Q8WTT2; Q99848; Q9BRT6; Q9BVP2; Q9BXY0; Q9BYG3; Q9BZE4; Q9H9Y2; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3T9; Q9Y3U8;	30-272	100	65×MG; 2×ZN; 1×ADP; 1×SF4; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State B1)	8fkr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O75683; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46776; P46778; P50914; P56182; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q6RFH5; Q8IY81; Q8TDN6; Q99848; Q9BVP2; Q9BXY0; Q9BYG3; Q9BZE4; Q9H9Y2; Q9NQ55; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y3B9; Q9Y3C1; Q9Y3U8;	30-272	100	54×MG; 2×ZN; 1×SF4; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State C2)	8fku PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P46779; P50914; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62906; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDD1; Q8TDN6; Q99848; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3U8;	30-272	100	58×MG; 2×ZN; 1×ADP; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State A2)	8fkq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O75683; P18077; P18124; P18621; P26373; P36578; P39023; P40429; P42766; P46776; P46778; P46779; P50914; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDN6; Q99848; Q9BYG3; Q9BZE4; Q9NQ55; Q9NVP1; Q9UHA3; Q9Y3B9; Q9Y3C1; Q9Y3U8;	30-272	100	51×MG; 2×ZN;
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Human nucleolar pre-60S ribosomal subunit (State B2)	8fks PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O75683; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46776; P46778; P46779; P50914; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDN6; Q99848; Q9BYG3; Q9BZE4; Q9NQ55; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y3B9; Q9Y3C1; Q9Y3U8;	30-272	100	61×MG; 2×ZN; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State D2)	8fkw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P46779; P50914; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62899; P62906; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDD1; Q8TDN6; Q8WTT2; Q99848; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3T9; Q9Y3U8;	30-272	100	59×MG; 2×ZN; 1×ADP; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State A1)	8fkp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O75683; P18077; P18124; P18621; P26373; P36578; P39023; P40429; P42766; P46776; P46778; P50914; P56182; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q6RFH5; Q8IY81; Q8TDN6; Q99848; Q9BVP2; Q9BXY0; Q9BYG3; Q9BZE4; Q9H9Y2; Q9NQ55; Q9NVP1; Q9UHA3; Q9Y3B9; Q9Y3C1; Q9Y3U8;	30-272	100	54×MG; 2×ZN; 1×SF4;
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Human nucleolar pre-60S ribosomal subunit (State E)	8fkx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P46779; P50914; P56537; P61254; P61313; P61927; P62424; P62750; P62829; P62899; P62906; P62910; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDD1; Q8TDN6; Q8WTT2; Q99848; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3T9; Q9Y3U8;	30-272	100	61×MG; 2×ZN; 1×ADP; 1×GDP; 1×K;
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Human nucleolar pre-60S ribosomal subunit (State F)	8fky PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P36578; P39023; P40429; P42766; P46087; P46776; P46778; P46779; P49207; P50914; P56537; P61254; P61313; P61353; P61927; P62424; P62750; P62829; P62888; P62899; P62906; P62910; P84098; Q02543; Q02878; Q07020; Q14137; Q15050; Q6DKI1; Q8IY81; Q8TDD1; Q8TDN6; Q8WTT2; Q99848; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9GZL7; Q9H6Y2; Q9NVP1; Q9UHA3; Q9UKD2; Q9Y221; Q9Y3C1; Q9Y3T9; Q9Y3U8;	30-272	100	70×MG; 3×ZN; 1×ADP; 1×GDP; 1×K;
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human nuclear pre-60S ribosomal particle - State B	8ir3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P84098; Q02543; Q02878; Q07020; Q13823; Q15050; Q6DKI1; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9H6F5; Q9H7B2; Q9NVX2; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-268	100	1×GTP; 1×MG;
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human nuclear pre-60S ribosomal particle - State G	8ine PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P83881; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q96EY4; Q9BRT6; Q9BYG3; Q9BZE4; Q9NZM5; Q9UHA3; Q9UKD2; Q9UNZ5; Q9Y3U8;	30-268	100	1×GDP; 1×MG; 1×K;
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human nuclear pre-60S ribosomal particle - State F	8inf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer E9PRG8; O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62906; P62910; P62913; P62917; P63173; P83881; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q96EY4; Q9BRT6; Q9BYG3; Q9BZE4; Q9NVU7; Q9NZM5; Q9UHA3; Q9UKD2; Q9UNZ5; Q9Y3U8;	30-268	100	1×GDP; 1×MG; 1×K;
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human nuclear pre-60S ribosomal particle - State C	8ipx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9H6F5; Q9NVX2; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-268	100	1×GTP; 1×MG;
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human nuclear pre-60S ribosomal particle - State D	8ipy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9H6F5; Q9NVU7; Q9NVX2; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-268	100	1×GTP; 1×MG;
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Human nucleolar pre-60S ribosomal subunit (State G)	8fkz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46778; P46779; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62917; P63173; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q9BRT6; Q9BVP2; Q9BYG3; Q9BZE4; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-267	100	64×MG; 4×ZN; 1×GDP; 1×K;
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Human nuclear pre-60S ribosomal subunit (State K1)	8fla PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P83881; P84098; Q02543; Q02878; Q07020; Q6DKI1; Q96EY4; Q9BRT6; Q9BYG3; Q9BZE4; Q9NZM5; Q9UHA3; Q9UKD2; Q9UNZ5; Q9Y3U8;	30-267	100	88×MG; 6×ZN; 1×GDP; 1×K;
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Human nuclear pre-60S ribosomal subunit (State J1)	8fl6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; O95478; P18077; P18124; P18621; P26373; P30050; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P83881; P84098; Q02543; Q02878; Q07020; Q13823; Q6DKI1; Q9BRT6; Q9BYG3; Q9BZE4; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-267	100	88×MG; 6×ZN; 1×GDP; 1×K;
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Human nuclear pre-60S ribosomal subunit (State L1)	8fld PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O00488; O00541; P18077; P18124; P18621; P26373; P27635; P32969; P35268; P36578; P39023; P40429; P42766; P46776; P46777; P46778; P46779; P47914; P49207; P50914; P56537; P61254; P61313; P61353; P61513; P61927; P62424; P62750; P62829; P62888; P62891; P62899; P62910; P62913; P62917; P63173; P83881; P84098; Q02543; Q02878; Q07020; Q6DKI1; Q9BRT6; Q9BYG3; Q9BZE4; Q9NZM5; Q9UHA3; Q9UKD2; Q9Y3U8;	30-267	100	87×MG; 6×ZN;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8fkv.1.h	monomer	0.82	30-272		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	8fkv.1.h	monomer	0.63	1-52		100.00
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O76021 (RL1D1_HUMAN) Homo sapiens (Human)

Ribosomal L1 domain-containing protein 1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

19 Experimental Structures

1 SWISS-MODEL model

1 SWISS-MODEL model built on isoform sequence

Alignments

Background

Resolution

Ribosomal L1 domain-containing protein 1 UniProtKB InterPro STRING Interactive Modelling