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SMTL ID : 8fkt.1

Human nucleolar pre-60S ribosomal subunit (State C1)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
64 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
1 x K: POTASSIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Vanden Broeck, A. et al., Principles of human pre-60 S biogenesis. Science (2023)
Release Date
2023-07-12
Peptides
60S ribosomal protein L12: A
60S ribosomal protein L10a: B
60S ribosomal protein L13: F
60S ribosomal protein L13a: G
60S ribosomal protein L14: H
60S ribosomal protein L15: I
60S ribosomal protein L17: J
60S ribosomal protein L18: K
60S ribosomal protein L18a: L
60S ribosomal protein L21: M
60S ribosomal protein L23: N
60S ribosomal protein L23a: O
60S ribosomal protein L26: P
60S ribosomal protein L27a: Q
60S ribosomal protein L3: R
60S ribosomal protein L32: S
60S ribosomal protein L35: T
60S ribosomal protein L35a: U
60S ribosomal protein L36: V
60S ribosomal protein L37: W
Guanine nucleotide-binding protein-like 3: X
Ribosome biogenesis protein NSA2 homolog: Y
60S ribosome subunit biogenesis protein NIP7 homolog: Z
ATP-dependent RNA helicase DDX54: 0
Protein LLP homolog: 1
Protein MAK16 homolog: 2
Ribosomal RNA processing protein 1 homolog A: 3
WD repeat-containing protein 74: 4
Ribosome production factor 1: 5
60S ribosomal protein L4: 6
60S ribosomal protein L6: 7
60S ribosomal protein L7: 8
60S ribosomal protein L7a: 9
60S ribosomal protein L9: a
MKI67 FHA domain-interacting nucleolar phosphoprotein: b
60S ribosomal protein L7-like 1: c
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3: d
Eukaryotic translation initiation factor 6: e
Ribosomal L1 domain-containing protein 1: f
Pescadillo homolog: g
Probable rRNA-processing protein EBP2: h
Ribosome biogenesis protein BRX1 homolog: i
mRNA turnover protein 4 homolog: j
GTP-binding protein 4: k
Ribosome biogenesis protein BOP1: l
Ribosome biogenesis regulatory protein homolog: m
Probable ribosome biogenesis protein RLP24: n
ATP-dependent RNA helicase DDX18: o
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase: p
Nucleolar protein 16: q
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
BA
B
BB
F
L6
G
L7
H
L8
I
L9
J
LA
K
LB
L
LC
M
LE
N
LG
O
LH
P
LI
Q
LK
R
LN
S
LQ
T
LS
U
LT
V
LU
W
LW
X
NB
Y
NF
Z
NH
0
NI
1
NK
2
NM
3
NO
4
NQ
5
NS
6
SA
7
SC
8
SD
9
SE
a
SG
b
SH
c
SI
d
SJ
e
SK
f
SL
g
SM
h
SN
i
SO
j
SQ
k
SR
l
SS
m
ST
n
SV
o
SW
p
SY
q
SZ

60S ribosomal protein L12

60S ribosomal protein L10a

60S ribosomal protein L13

60S ribosomal protein L13a

60S ribosomal protein L14

60S ribosomal protein L15

60S ribosomal protein L17

60S ribosomal protein L18

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L23

60S ribosomal protein L23a

60S ribosomal protein L26

60S ribosomal protein L27a

60S ribosomal protein L3

60S ribosomal protein L32

60S ribosomal protein L35

60S ribosomal protein L35a

60S ribosomal protein L36

60S ribosomal protein L37

Guanine nucleotide-binding protein-like 3

Ribosome biogenesis protein NSA2 homolog

60S ribosome subunit biogenesis protein NIP7 homolog

ATP-dependent RNA helicase DDX54

Protein LLP homolog

Protein MAK16 homolog

Ribosomal RNA processing protein 1 homolog A

WD repeat-containing protein 74

Ribosome production factor 1

60S ribosomal protein L4

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

MKI67 FHA domain-interacting nucleolar phosphoprotein

60S ribosomal protein L7-like 1

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Eukaryotic translation initiation factor 6

Ribosomal L1 domain-containing protein 1

Pescadillo homolog

Probable rRNA-processing protein EBP2

Ribosome biogenesis protein BRX1 homolog

mRNA turnover protein 4 homolog

GTP-binding protein 4

Ribosome biogenesis protein BOP1

Ribosome biogenesis regulatory protein homolog

Probable ribosome biogenesis protein RLP24

ATP-dependent RNA helicase DDX18

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

Nucleolar protein 16

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