P0CX53 | SWISS-MODEL Repository

P0CX53 (RL12A_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL11A UniProtKB InterPro STRING Interactive Modelling

165 aa; Sequence (Fasta) ; 12 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

27 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
NPC-trapped pre-60S particle	8hfr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P34232; P36105; P38061; P38202; P38861; P39715; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08687; Q12522; Q12690; Q99257;	6-164	237×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-165	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-165	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Structure of pre-60S particle bound to DRG1(AFG2).	7z34 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P32794; P33201; P36105; P38061; P38202; P38861; P40078; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12522; Q12690;	8-165	11×AGS; 1×MG;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-165	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P40693; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	8-165	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	6r84 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P40024; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	9-163	1×ZN;
Assess
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	6r87 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	9-163	1×ZN;
Assess
Yeast Vms1-60S ribosomal subunit complex (post-state)	6r86 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q04311; Q12522; Q12690; Q3E757;	9-163	1×ZN;
Assess
Subunit joining exposes nascent pre-40S rRNA for processing and quality control	6oig SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02326; Q02753; Q12690; Q3E757;	9-163
Assess
Yeast RQC complex in state F	8agt SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	10-163	13×MG; 7×ZN;
Assess
Rix1-Rea1 pre-60S particle - full composite structure	6ylh SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P38883; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P53877; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12019; Q12522; Q12690;	11-164	4×ZN; 2×GTP; 2×MG;
Assess
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	6ylg SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P38202; P38803; P40010; P40078; P47019; P49166; P49167; P53188; P53313; P53742; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q12522; Q12690;	11-164	4×ZN; 2×GTP; 2×MG;
Assess
Yeast RQC complex in state G	8aaf SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12532; Q12690;	10-163	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	8agz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;	10-163	13×MG; 7×ZN; 1×SPD;
Assess
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	7ug6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P40010; P40078; P47019; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q08746; Q12522; Q12690;	11-164	1×GDP; 1×MG;
Assess
Yeast RQC complex in state E	8agu SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUL8; A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q3W0; A0A6A5Q627; A0A6A5Q7I9; A0A8H4F709; A0A8H8UMB4; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P87262; Q02753; Q04781; Q12522; Q12690;	10-163	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state D	8agw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;	10-163	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	8agx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P14126; P17076; P23301; P26321; P26784; P36105; P38061; P41805; P49166; P49167; P87262; Q02753; Q04781; Q12532; Q12690;	10-163	13×MG; 7×ZN; 1×SPD;
Assess
Yeast RQC complex in state H	8agv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A6A5PUZ5; A0A6A5PWR1; A0A6A5Q0W8; A0A6A5Q275; A0A6A5Q627; A0A8H4F709; P02406; P04449; P04456; P04650; P05317; P05737; P05738; P05739; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P0CX86; P10664; P14120; P17076; P23301; P26784; P36105; P38061; P49166; P49167; P87262; Q02753; Q04781; Q12522; Q12690;	10-163	13×MG; 7×ZN;
Assess
Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners	3j16 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05317; P05738; P0CX31; P0CX33; P0CX37; P0CX41; P33309; Q03195;	7-144	1×MG; 1×ATP; 2×SF4;
Assess
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	5jcs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P49166; P49167; P53313; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12019; Q12522; Q12690;	12-138
Assess
Arx1 pre-60S particle.	4v7f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P40693; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12522; Q12690;	12-138
Assess
Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	6n8j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P33201; P36105; P38061; P38202; P40078; P49166; P49167; P53742; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12522; Q12690;	10-110	2×GTP; 2×MG;
Assess
Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	6n8n SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	10-110
Assess
Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	6n8m SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P49166; P49167; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	10-110
Assess
Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	6n8o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04449; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05747; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CH08; P0CX23; P0CX25; P0CX27; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26321; P26784; P36105; P38061; P38861; P41805; P49166; P49167; P53145; P87262; Q02256; Q02326; Q02753; Q12522; Q12690;	10-110
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8fl6.1.A	monomer	0.68	6-164		70.73
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P0CX53 (RL12A_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Large ribosomal subunit protein uL11A UniProtKBInterProSTRINGInteractive Modelling

Available Structures

27 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Large ribosomal subunit protein uL11A UniProtKB InterPro STRING Interactive Modelling