P0DM37 (PSBY_THEVL) Thermostichus vulcanus (Synechococcus vulcanus)
Photosystem II reaction center protein Y UniProtKBInterProInteractive Modelling
34 aa; Sequence (Fasta)
It is possible new templates exist for this target since these models were created.
Available Structures
34 Experimental Structures
Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
---|---|---|---|---|---|---|
Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 3×CL; 1×BCT; 35×CLA; 2×PHO; 11×BCR; 5×SQD; 20×GOL; 6×LMT; 1×OEX; 2×PL9; 9×UNL; 3×CA; 6×LMG; 10×HTG; 5×DGD; 5×LHG; 1×HEM; 1×MG; 1×HEC; | |||
Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 3×CL; 1×BCT; 35×CLA; 2×PHO; 11×BCR; 3×SQD; 21×GOL; 9×UNL; 7×LMT; 1×OEX; 2×PL9; 3×CA; 6×LMG; 10×HTG; 5×DGD; 5×LHG; 1×HEM; 1×MG; 1×HEC; | |||
Crystal structure of DBBQ-bound photosystem II complex |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×OEX; 2×FE2; 4×CL; 70×CLA; 4×PHO; 20×BCR; 8×SQD; 10×LMG; 20×LMT; 44×UNL; 4×PL9; 4×K2I; 2×BCT; 128×DMS; 5×CA; 21×HTG; 21×GOL; 9×DGD; 10×LHG; 2×HEM; 2×RRX; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II under dark conditions |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 12×LMG; 10×LHG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 10×LHG; 14×LMT; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond del… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond de… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 14×LMT; 12×LMG; 11×HTG; 8×DGD; 7×CA; 10×LHG; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond del… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-microsecond d… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×OEY; 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 11×HTG; 12×LMG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond del… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×OEY; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×FE2; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
Structure of cyanobacterial photosystem II in the dark S1 state |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 12×GOL; 8×SQD; 2×OEX; 4×PL9; 18×UNL; 10×LHG; 12×LMG; 11×HTG; 14×LMT; 8×DGD; 7×CA; 2×BCT; 4×HEC; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 14×LMT; 12×LMG; 10×LHG; 11×HTG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 14×LMT; 12×LMG; 11×HTG; 8×DGD; 7×CA; 10×LHG; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond del… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 4×PHO; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 30-microsecond de… |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 22×BCR; 21×GOL; 8×SQD; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 4×PHO; 2×HEM; 2×MG; 2×HEC; | |||
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 21×GOL; 2×OEX; 4×PL9; 18×UNL; 2×BCT; 14×LMT; 10×LHG; 12×LMG; 11×HTG; 8×DGD; 7×CA; 2×HEM; 2×MG; 2×HEC; | |||
Native XFEL structure of Photosystem II (preflash two-flash dataset |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 2×CL; 1×BCT; 35×CLA; 2×PHO; 11×BCR; 4×SQD; 5×GOL; 1×OEX; 1×OEY; 2×PL9; 9×UNL; 6×LMG; 7×LMT; 8×HTG; 4×DGD; 3×CA; 5×LHG; 1×HEM; 1×MG; 1×HEC; | |||
Photosystem II structure in the S1 state |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 12×GOL; 8×SQD; 2×OEX; 4×PL9; 18×UNL; 12×LMG; 10×LHG; 11×HTG; 14×LMT; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
Native XFEL structure of photosystem II (preflash dark dataset) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 2×CL; 35×CLA; 2×PHO; 11×BCR; 4×SQD; 5×GOL; 1×OEX; 2×PL9; 9×UNL; 1×BCT; 6×LMT; 6×LMG; 6×HTG; 4×DGD; 3×CA; 5×LHG; 1×HEM; 1×MG; 1×HEC; | |||
Photosystem II structure in the S2 state |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 4×CL; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 12×GOL; 2×OEX; 4×PL9; 18×UNL; 10×LHG; 11×HTG; 14×LMT; 12×LMG; 8×DGD; 7×CA; 2×BCT; 2×HEM; 2×MG; 2×HEC; | |||
Native XFEL structure of photosystem II (dark dataset) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 2×CL; 35×CLA; 2×PHO; 11×BCR; 5×SQD; 4×GOL; 1×OEX; 2×PL9; 9×UNL; 5×LHG; 1×BCT; 6×LMG; 8×HTG; 9×LMT; 4×DGD; 3×CA; 1×HEM; 1×MG; 1×HEC; | |||
Native XFEL structure of photosystem II (two flash dataset) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×FE2; 2×CL; 35×CLA; 2×PHO; 11×BCR; 5×SQD; 5×GOL; 1×OEX; 2×PL9; 9×UNL; 5×LHG; 1×BCT; 4×CA; 6×LMG; 9×LMT; 9×HTG; 4×DGD; 1×HEM; 1×MG; 1×HEC; | |||
Cryo-EM Structure of PSII at 1.95 angstrom resolution |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×OEX; 2×FE2; 4×CL; 70×CLA; 4×PHO; 20×BCR; 8×SQD; 4×PL9; 36×UNL; 10×LMG; 8×DGD; 8×LMT; 2×BCT; 10×LHG; 2×HEM; 2×MG; 2×HEC; 2×RRX; | |||
Cryo-EM Structure of PSII at 2.08 angstrom resolution |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×OEX; 2×FE2; 4×CL; 70×CLA; 4×PHO; 20×BCR; 8×SQD; 4×PL9; 36×UNL; 2×BCT; 10×LMG; 10×LHG; 8×DGD; 2×HEM; 2×RRX; 8×LMT; 2×MG; 2×HEC; | |||
Structure of monomeric photosystem II |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 1×OEX; 1×FE2; 35×CLA; 2×PHO; 8×BCR; 2×SQD; 3×LMG; 2×PL9; 1×UNL; 4×DGD; 1×BCT; 4×LHG; 1×HEM; 1×RRX; 1×HEC; | |||
XFEL structure of cyanobacterial photosystem II (dark state, dataset1) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 4×PL9; 18×UNL; 9×CA; 17×HTG; 12×LMG; 10×DGD; 10×LHG; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (1F state, dataset1) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 4×PL9; 18×UNL; 12×LMG; 9×CA; 17×HTG; 10×DGD; 10×LHG; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (2F state, dataset1) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 2×OEY; 4×PL9; 18×UNL; 12×LMG; 9×CA; 17×HTG; 10×DGD; 10×LHG; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (dark state, dataset2) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 4×PL9; 18×UNL; 12×LMG; 9×CA; 17×HTG; 10×LHG; 10×DGD; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (1F state, dataset2) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 2×OEY; 4×PL9; 18×UNL; 12×LMG; 9×CA; 17×HTG; 10×DGD; 10×LHG; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (2F state, dataset2) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 6×CL; 2×BCT; 70×CLA; 4×PHO; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 2×OEY; 4×PL9; 18×UNL; 10×LHG; 9×CA; 17×HTG; 12×LMG; 10×DGD; 2×FE2; 4×HEM; 2×MG; | |||
XFEL structure of cyanobacterial photosystem II (3F state, dataset2) |
Heteromer D0VWR1; D0VWR2; D0VWR3; D0VWR4; D0VWR5; D0VWR7; D0VWR8; P0A387; P12238; P12239; P12240; P12241; P12312; P12313; P19052; P19054; P51765; P56152; Q7DGD4; | 100 | 2×FE2; 6×CL; 70×CLA; 22×BCR; 8×SQD; 35×GOL; 14×LMT; 2×OEX; 2×OEY; 4×PL9; 18×UNL; 9×CA; 17×HTG; 10×DGD; 12×LMG; 2×BCT; 4×PHO; 10×LHG; 4×HEM; 2×MG; | |||
1 SWISS-MODEL model
Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
---|---|---|---|---|---|---|
7cjj.1.T | monomer | 0.72 | 100.00 | |||