- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-1-mer
- Ligands
- 2 x FE2: FE (II) ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: N.181, H.332, E.333
- Chain D: K.307
Ligand excluded by PLIPCL.48: 5 residues within 4Å:- Chain A: H.337, N.338, F.339
- Chain C: G.335, E.336
Ligand excluded by PLIPCL.112: 4 residues within 4Å:- Chain U: N.181, H.332, E.333
- Chain X: K.307
Ligand excluded by PLIPCL.159: 5 residues within 4Å:- Chain U: H.337, N.338, F.339
- Chain W: G.335, E.336
Ligand excluded by PLIP- 70 x CLA: CHLOROPHYLL A(Non-covalent)
CLA.3: 28 residues within 4Å:- Chain A: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, A.286, A.287, I.290
- Chain D: L.172, L.195
- Chain N: F.17
- Ligands: CLA.4, CLA.5, PHO.6, CLA.77, LHG.81
18 PLIP interactions:3 interactions with chain D, 14 interactions with chain A, 1 interactions with chain N,- Hydrophobic interactions: D:L.172, D:L.172, D:L.195, A:F.119, A:P.150, A:F.182, A:F.186, A:Q.187, A:I.192, A:I.192, A:L.193, A:V.205, A:F.206, A:F.206, A:I.290, N:F.17
- Water bridges: A:I.290
- Metal complexes: A:H.198
CLA.4: 21 residues within 4Å:- Chain A: T.45, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain D: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.3, PHO.6, SQD.11, CLA.77, PL9.80, LHG.81, LHG.98
7 PLIP interactions:5 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions,- Hydrophobic interactions: A:T.45, A:V.157, A:F.158, A:F.180, A:F.182, D:V.191
- Metal complexes: H2O.4
CLA.5: 21 residues within 4Å:- Chain A: Q.199, V.202, A.203, F.206, G.207, L.210, F.260, W.278
- Chain D: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.3, PL9.13, PHO.15, DGD.67, CLA.77, LMG.86, LHG.88
13 PLIP interactions:6 interactions with chain D, 6 interactions with chain A, 1 Ligand-Water interactions- Hydrophobic interactions: D:F.147, D:F.147, D:I.168, D:F.171, D:L.172, D:L.172, A:V.202, A:F.206, A:L.210, A:F.260, A:W.278
- pi-Stacking: A:F.206
- Metal complexes: H2O.6
CLA.7: 25 residues within 4Å:- Chain A: I.36, P.39, T.40, F.93, Y.94, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Chain H: V.8, Y.9, V.11, V.12, T.13, F.15, V.20
- Ligands: BCR.8, LMG.49, CLA.54, CLA.55, DGD.65
21 PLIP interactions:7 interactions with chain H, 14 interactions with chain A,- Hydrophobic interactions: H:Y.9, H:V.11, H:V.12, H:V.12, H:F.15, H:F.15, H:V.20, A:I.36, A:P.39, A:T.40, A:F.93, A:P.95, A:I.96, A:W.97, A:W.97, A:L.114, A:F.117, A:L.121
- Hydrogen bonds: A:I.96
- Salt bridges: A:H.118
- Metal complexes: A:H.118
CLA.17: 8 residues within 4Å:- Chain B: W.184, G.185, P.186, F.189
- Chain G: F.40, L.54
- Ligands: CLA.18, BCR.92
7 PLIP interactions:3 interactions with chain G, 3 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: G:F.40, G:F.40, G:L.54, B:P.186, B:F.189, B:F.189
- Metal complexes: H2O.12
CLA.18: 25 residues within 4Å:- Chain B: G.188, F.189, P.191, G.196, A.199, H.200, A.203, A.204, V.207, F.246, F.249, V.250
- Chain D: V.144, L.148
- Chain G: F.37, F.40, I.44, L.45, Y.48
- Ligands: CLA.17, CLA.19, CLA.21, CLA.24, CLA.25, BCR.92
19 PLIP interactions:12 interactions with chain B, 5 interactions with chain G, 2 interactions with chain D,- Hydrophobic interactions: B:F.189, B:F.189, B:F.189, B:A.199, B:H.200, B:A.204, B:V.207, B:V.207, B:F.246, B:F.249, B:F.249, G:F.37, G:F.40, G:I.44, G:I.44, G:L.45, D:V.144, D:L.148
- Metal complexes: B:H.200
CLA.19: 21 residues within 4Å:- Chain B: R.67, L.68, A.145, L.148, C.149, F.152, M.165, V.197, H.200, H.201, F.246, A.247, V.251, T.261
- Chain G: M.34
- Ligands: CLA.18, CLA.20, CLA.21, CLA.22, CLA.25, CLA.26
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:L.68, B:L.148, B:F.152, B:F.152, B:F.152, B:F.246, B:A.247, B:V.251
- Hydrogen bonds: B:R.67
- Salt bridges: B:R.67
- pi-Cation interactions: B:H.200
- Metal complexes: B:H.201
CLA.20: 25 residues within 4Å:- Chain B: W.32, F.60, F.64, R.67, L.147, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, A.458, F.461
- Ligands: CLA.19, CLA.21, CLA.22, CLA.23, CLA.27, CLA.28, CLA.29, CLA.31, CLA.32, UNL.41
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:W.32, B:F.60, B:F.64, B:F.64, B:L.147, B:L.148, B:V.244, B:A.247, B:V.251, B:F.457, B:F.457, B:F.461, B:F.461
- Salt bridges: B:R.67
- Metal complexes: B:H.454
CLA.21: 25 residues within 4Å:- Chain B: T.26, V.29, A.30, W.32, A.33, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, C.149, A.204
- Ligands: CLA.18, CLA.19, CLA.20, CLA.22, CLA.25, CLA.26, CLA.28, CLA.31, BCR.35, UNL.41
10 PLIP interactions:10 interactions with chain B,- Hydrophobic interactions: B:T.26, B:A.30, B:W.32, B:A.33, B:L.68, B:V.95, B:L.102
- Water bridges: B:R.67
- Salt bridges: B:R.67
- Metal complexes: B:H.99
CLA.22: 25 residues within 4Å:- Chain B: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: CLA.19, CLA.20, CLA.21, CLA.32, BCR.35, UNL.41, SQD.121
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:L.68, B:V.70, B:W.90, B:W.90, B:A.98, B:V.101, B:L.102, B:L.105, B:L.148, B:F.155, B:F.161, B:F.161
- Metal complexes: B:H.156
CLA.23: 28 residues within 4Å:- Chain B: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, F.324, T.326, G.327, P.328, W.449, F.450, A.453, H.454
- Chain D: F.186, T.267, M.271
- Chain L: F.14
- Ligands: LHG.16, CLA.20, CLA.29, BCR.33, BCR.34, BCR.47, PL9.80, LMG.100
12 PLIP interactions:8 interactions with chain B, 2 interactions with chain D, 1 interactions with chain L, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Y.39, B:F.60, B:F.60, B:F.324, B:W.449, D:F.186, D:T.267, L:F.14
- Hydrogen bonds: B:Y.39, B:G.327
- pi-Stacking: B:F.60
- Metal complexes: H2O.13
CLA.24: 27 residues within 4Å:- Chain B: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain D: L.79, F.110, I.113, M.116, L.117, F.120, I.140
- Chain G: L.42
- Ligands: CLA.18, CLA.25, CLA.26, CLA.78, UNL.84, DGD.93
16 PLIP interactions:9 interactions with chain B, 7 interactions with chain D,- Hydrophobic interactions: B:A.242, B:F.245, B:F.246, B:F.462, B:F.462, B:L.473, D:L.79, D:F.110, D:F.110, D:I.113, D:M.116, D:L.117, D:I.140
- Hydrogen bonds: B:S.238
- Water bridges: B:S.239
- Metal complexes: B:H.465
CLA.25: 26 residues within 4Å:- Chain B: F.138, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain D: F.110
- Chain G: T.26, T.27, M.30, F.33, L.38, L.41, L.42
- Ligands: CLA.18, CLA.19, CLA.21, CLA.24, CLA.26, UNL.84, BCR.92
16 PLIP interactions:6 interactions with chain G, 9 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: G:M.30, G:F.33, G:L.38, G:L.41, G:L.42, B:F.138, B:V.207, B:A.211, B:F.214, B:F.214, B:L.224, B:L.228, D:F.110
- Hydrogen bonds: G:T.26
- Salt bridges: B:H.215
- Metal complexes: B:H.215
CLA.26: 20 residues within 4Å:- Chain B: H.22, L.134, M.137, F.138, H.141, L.142, A.145, M.230, I.233, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.19, CLA.21, CLA.24, CLA.25, CLA.28, CLA.31
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:L.134, B:M.137, B:F.138, B:F.138, B:M.230, B:I.233, B:T.235, B:V.236, B:A.243
- Metal complexes: H2O.7
CLA.27: 24 residues within 4Å:- Chain B: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471, F.478
- Chain L: F.21
- Ligands: LHG.16, CLA.20, CLA.28, CLA.29, CLA.30, LHG.98
15 PLIP interactions:14 interactions with chain B, 1 interactions with chain L,- Hydrophobic interactions: B:W.4, B:W.4, B:T.9, B:L.237, B:L.237, B:I.241, B:F.457, B:F.461, B:F.463, L:F.21
- Hydrogen bonds: B:H.8
- Salt bridges: B:H.8, B:R.471
- pi-Stacking: B:W.467
- Metal complexes: B:H.468
CLA.28: 21 residues within 4Å:- Chain B: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, I.241, V.244
- Ligands: CLA.20, CLA.21, CLA.26, CLA.27, CLA.29, CLA.30, CLA.31
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:L.11, B:L.18, B:H.25, B:I.233, B:V.236, B:L.237, B:L.237, B:V.244
- Hydrogen bonds: B:S.240
- Salt bridges: B:H.22
- Metal complexes: B:H.22
CLA.29: 14 residues within 4Å:- Chain B: H.8, H.25, V.29, W.32, F.461
- Ligands: LHG.16, CLA.20, CLA.23, CLA.27, CLA.28, CLA.30, BCR.33, BCR.34, LMG.100
8 PLIP interactions:8 interactions with chain B,- Hydrophobic interactions: B:V.29, B:V.29, B:W.32, B:W.32, B:F.461, B:F.461
- Salt bridges: B:H.8
- Metal complexes: B:H.25
CLA.30: 24 residues within 4Å:- Chain 7: F.8
- Chain B: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Chain K: Q.8, V.10
- Chain L: F.21, L.25
- Ligands: CLA.27, CLA.28, CLA.29, BCR.33, SQD.36, BCR.47, LHG.98, LMG.100, UNL.211, LMT.212
9 PLIP interactions:6 interactions with chain B, 2 interactions with chain L, 1 interactions with chain 7,- Hydrophobic interactions: B:V.7, B:L.11, B:M.24, B:L.28, B:W.114, L:F.21, L:L.25, 7:F.8
- Metal complexes: B:H.8
CLA.31: 19 residues within 4Å:- Chain B: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Chain G: L.6, L.10, L.13, N.14
- Ligands: CLA.20, CLA.21, CLA.26, CLA.28, CLA.32, BCR.35
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.132, B:L.144, G:L.6, G:L.10, G:L.13, G:L.13
- Hydrogen bonds: B:H.22
- Metal complexes: B:H.141
CLA.32: 15 residues within 4Å:- Chain B: I.19, L.23, A.109, W.112, H.113, L.119
- Chain G: T.4, L.6, G.7, L.10
- Ligands: CLA.20, CLA.22, CLA.31, BCR.35, UNL.41
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain G,- Hydrophobic interactions: B:I.19, B:L.23, B:W.112, B:W.112, B:L.119, G:L.6, G:L.10
- pi-Stacking: B:W.112
- Metal complexes: B:H.113
- Hydrogen bonds: G:T.4
- Water bridges: G:L.6
CLA.50: 21 residues within 4Å:- Chain C: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.51, CLA.52, CLA.55, CLA.56, BCR.64
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:A.154, C:L.157, C:I.206, C:I.222, C:I.222, C:A.260, C:M.264, C:I.267, C:F.271, C:V.278
- Metal complexes: C:H.219
CLA.51: 25 residues within 4Å:- Chain C: W.45, I.69, H.73, L.77, L.156, K.160, F.164, L.261, M.264, G.265, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.50, CLA.52, CLA.53, CLA.59, CLA.61, LMG.68, HTG.70
16 PLIP interactions:16 interactions with chain C,- Hydrophobic interactions: C:W.45, C:I.69, C:L.77, C:L.156, C:K.160, C:F.164, C:L.261, C:M.264, C:A.268, C:L.408, C:L.415, C:F.419
- Hydrogen bonds: C:Y.279
- Salt bridges: C:H.73, C:H.412
- Metal complexes: C:H.412
CLA.52: 19 residues within 4Å:- Chain C: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100, M.264
- Ligands: CLA.50, CLA.51, CLA.56, CLA.58, CLA.59, CLA.61, CLA.62, LMG.69
6 PLIP interactions:6 interactions with chain C,- Hydrophobic interactions: C:V.43, C:A.46, C:L.77, C:V.96
- Salt bridges: C:H.73
- Metal complexes: C:H.100
CLA.53: 20 residues within 4Å:- Chain C: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Chain J: P.17, V.21
- Ligands: CLA.51, CLA.57, CLA.59, DGD.66, DGD.67, LMG.68, LHG.82
13 PLIP interactions:1 interactions with chain J, 11 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: J:V.21, C:W.45, C:F.52, C:I.69, C:I.69, C:W.407, C:W.407, C:L.408, C:F.418, C:F.418, C:F.418
- pi-Stacking: C:W.45
- Metal complexes: H2O.20
CLA.54: 25 residues within 4Å:- Chain A: F.33, L.121, M.127, G.128, W.131
- Chain C: F.246, S.255, Y.256, G.259, A.260, M.263, L.420, H.423, L.424, A.427, R.431
- Chain H: V.12, V.16, F.19, F.23
- Ligands: CLA.7, LMG.49, CLA.56, BCR.64, DGD.65
18 PLIP interactions:4 interactions with chain H, 9 interactions with chain C, 5 interactions with chain A,- Hydrophobic interactions: H:V.12, H:V.16, H:F.19, H:F.23, C:F.246, C:Y.256, C:Y.256, C:L.420, C:L.424, A:L.121, A:W.131, A:W.131, A:W.131
- Water bridges: C:I.247, C:I.247
- Salt bridges: C:R.431
- Metal complexes: C:H.423
- pi-Stacking: A:W.131
CLA.55: 19 residues within 4Å:- Chain C: L.143, L.147, I.225, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, A.242, F.246
- Ligands: CLA.7, CLA.50, CLA.56, BCR.64, DGD.65, LMT.73
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:L.143, C:L.147, C:L.147, C:W.232, C:W.241, C:F.246
- Hydrogen bonds: C:F.239
- Salt bridges: C:H.233
- Metal complexes: C:H.233
CLA.56: 21 residues within 4Å:- Chain C: M.139, T.140, L.143, H.146, L.147, L.150, C.226, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.50, CLA.52, CLA.54, CLA.55, CLA.58, BCR.64
17 PLIP interactions:16 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:M.139, C:T.140, C:L.143, C:L.143, C:L.150, C:F.246, C:F.246, C:W.248, C:W.248, C:Y.253, C:Y.253, C:Y.256, C:Y.256, C:A.260, C:L.261
- Hydrogen bonds: C:H.146
- Metal complexes: H2O.16
CLA.57: 22 residues within 4Å:- Chain C: W.18, A.19, G.20, N.21, A.22, E.251, L.254, L.258, F.418, F.419, G.422, W.425, H.426, R.429
- Chain J: V.21
- Ligands: SQD.9, CLA.53, CLA.58, CLA.59, CLA.60, DGD.66, LHG.82
11 PLIP interactions:1 interactions with chain J, 10 interactions with chain C,- Hydrophobic interactions: J:V.21, C:L.254, C:L.254, C:L.258, C:F.419, C:W.425
- Hydrogen bonds: C:N.21
- Salt bridges: C:H.426, C:R.429
- pi-Stacking: C:W.425
- Metal complexes: C:H.426
CLA.58: 23 residues within 4Å:- Chain C: N.21, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, I.142, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.52, CLA.56, CLA.57, CLA.59, CLA.60, CLA.61
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:N.21, C:I.25, C:L.31, C:A.34, C:H.38, C:W.133, C:W.133, C:I.142, C:L.150, C:Y.253
- Hydrogen bonds: C:S.257
- Metal complexes: C:H.35
CLA.59: 18 residues within 4Å:- Chain C: N.21, H.38, L.41, I.42, W.45, L.261, L.415, F.418, F.419
- Chain J: P.20, L.24
- Ligands: CLA.51, CLA.52, CLA.53, CLA.57, CLA.58, CLA.60, LHG.82
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain J,- Hydrophobic interactions: C:L.41, C:W.45, C:L.261, C:L.415, C:F.418, C:F.419, J:P.20, J:L.24
- Hydrogen bonds: C:N.21
- Metal complexes: C:H.38
CLA.60: 34 residues within 4Å:- Chain C: T.6, N.7, R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, F.109, V.112
- Chain J: F.23, L.24, A.27, W.30, Q.31
- Chain R: I.19, I.20, L.23, N.29, L.30
- Chain S: M.19, V.20, V.23, P.24, A.28
- Ligands: CLA.57, CLA.58, CLA.59, BCR.97, LMG.110
21 PLIP interactions:3 interactions with chain S, 7 interactions with chain J, 8 interactions with chain C, 3 interactions with chain R,- Hydrophobic interactions: S:V.23, S:P.24, S:A.28, J:F.23, J:L.24, J:A.27, J:W.30, J:Q.31, C:W.17, C:L.24, C:L.24, C:F.109, C:V.112, R:I.19, R:I.20, R:L.30
- pi-Stacking: J:W.30, J:W.30
- Hydrogen bonds: C:R.23
- Water bridges: C:K.30
- Salt bridges: C:R.8
CLA.61: 19 residues within 4Å:- Chain C: H.35, A.39, L.107, L.122, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153
- Ligands: CLA.51, CLA.52, CLA.58, CLA.62, BCR.63
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:H.35, C:L.122, C:F.128, C:F.129, C:Y.131, C:I.142, C:F.145, C:F.145, C:I.148, C:I.148, C:V.149, C:V.149, C:I.152
- Metal complexes: C:H.146
CLA.62: 16 residues within 4Å:- Chain C: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.52, CLA.61, BCR.63, LMG.69, LMG.110
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:L.32, C:L.32, C:V.36, C:V.106, C:L.107, C:Y.113, C:L.122, C:Y.125, C:F.129, C:F.129, C:F.129
- Salt bridges: C:H.114
- pi-Stacking: C:F.129
- Metal complexes: C:H.114
CLA.77: 28 residues within 4Å:- Chain A: M.183, F.206
- Chain D: W.38, L.112, P.139, V.142, F.143, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.3, CLA.4, CLA.5, PHO.15
17 PLIP interactions:16 interactions with chain D, 1 interactions with chain A,- Hydrophobic interactions: D:W.38, D:L.112, D:V.142, D:F.143, D:F.171, D:F.175, D:Q.176, D:T.182, D:V.191, D:V.191, D:V.194, D:V.194, D:L.195, D:L.269, A:F.206
- pi-Stacking: D:W.181
- Metal complexes: D:H.187
CLA.78: 23 residues within 4Å:- Chain D: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, T.102, F.103, L.106, H.107, F.110
- Chain G: L.38, L.42
- Chain Q: F.10, G.12, G.16, V.19
- Ligands: CLA.24, UNL.108
15 PLIP interactions:11 interactions with chain D, 3 interactions with chain Q, 1 interactions with chain G,- Hydrophobic interactions: D:L.26, D:P.29, D:L.33, D:L.81, D:W.83, D:L.106, D:F.110, Q:F.10, Q:V.19, Q:V.19, G:L.42
- Hydrogen bonds: D:L.82
- Salt bridges: D:H.107
- pi-Stacking: D:F.103
- Metal complexes: D:H.107
CLA.113: 29 residues within 4Å:- Chain U: F.119, Y.147, P.150, S.153, V.157, F.182, M.183, I.184, F.186, Q.187, I.192, L.193, H.198, G.201, V.202, V.205, F.206, V.283, A.286, A.287, I.290
- Chain X: L.172, L.195, F.247
- Ligands: CLA.114, CLA.115, PHO.116, CLA.187, LHG.192
19 PLIP interactions:4 interactions with chain X, 15 interactions with chain U,- Hydrophobic interactions: X:L.172, X:L.172, X:L.195, X:F.247, U:F.119, U:F.182, U:F.186, U:Q.187, U:I.192, U:I.192, U:L.193, U:V.202, U:V.202, U:V.205, U:F.206, U:F.206, U:I.290
- Water bridges: U:I.290
- Metal complexes: U:H.198
CLA.114: 20 residues within 4Å:- Chain U: T.45, V.157, F.158, M.172, I.176, T.179, F.180, F.182, M.183
- Chain X: M.188, V.191, A.192, L.195, G.196
- Ligands: CLA.113, PHO.116, LHG.158, CLA.187, PL9.190, LHG.192
6 PLIP interactions:5 interactions with chain U, 1 Ligand-Water interactions,- Hydrophobic interactions: U:T.45, U:V.157, U:F.158, U:F.180, U:F.182
- Metal complexes: H2O.45
CLA.115: 20 residues within 4Å:- Chain U: Q.199, V.202, A.203, F.206, G.207, L.210, W.278
- Chain X: F.147, V.165, I.168, F.169, F.171, L.172
- Ligands: CLA.113, PL9.124, PHO.126, LHG.129, DGD.178, CLA.187, LMG.196
12 PLIP interactions:4 interactions with chain U, 7 interactions with chain X, 1 Ligand-Water interactions,- Hydrophobic interactions: U:V.202, U:L.210, U:W.278, X:F.147, X:F.147, X:I.168, X:F.169, X:F.171, X:L.172, X:L.172
- pi-Stacking: U:F.206
- Metal complexes: H2O.46
CLA.117: 24 residues within 4Å:- Chain 1: V.8, Y.9, V.11, V.12, T.13, F.15, V.16
- Chain U: I.36, P.39, T.40, F.93, P.95, I.96, W.97, Q.113, L.114, F.117, H.118, L.121
- Ligands: BCR.118, LMG.127, CLA.165, CLA.166, DGD.176
18 PLIP interactions:13 interactions with chain U, 5 interactions with chain 1,- Hydrophobic interactions: U:I.36, U:P.39, U:T.40, U:F.93, U:P.95, U:I.96, U:W.97, U:W.97, U:L.114, U:F.117, 1:V.11, 1:V.12, 1:F.15, 1:V.16
- Hydrogen bonds: U:I.96, 1:Y.9
- Salt bridges: U:H.118
- Metal complexes: U:H.118
CLA.131: 9 residues within 4Å:- Chain 0: F.40, L.54
- Chain V: W.184, G.185, P.186, F.189
- Ligands: CLA.132, HTG.152, BCR.202
8 PLIP interactions:4 interactions with chain V, 3 interactions with chain 0, 1 Ligand-Water interactions,- Hydrophobic interactions: V:W.184, V:P.186, V:F.189, V:F.189, 0:F.40, 0:F.40, 0:L.54
- Metal complexes: H2O.48
CLA.132: 26 residues within 4Å:- Chain 0: F.37, F.40, I.44, L.45, Y.48
- Chain V: E.183, W.184, G.188, F.189, P.191, G.196, A.199, H.200, A.203, V.207, F.245, F.246, F.249, V.250
- Chain X: V.144, L.152
- Ligands: CLA.131, CLA.133, CLA.139, BCR.202, DGD.203
21 PLIP interactions:13 interactions with chain V, 6 interactions with chain 0, 2 interactions with chain X,- Hydrophobic interactions: V:W.184, V:F.189, V:F.189, V:F.189, V:A.199, V:H.200, V:V.207, V:V.207, V:F.245, V:F.246, V:F.249, V:F.249, 0:F.37, 0:F.40, 0:I.44, 0:I.44, 0:Y.48, X:V.144, X:L.152
- Metal complexes: V:H.200
- pi-Stacking: 0:F.40
CLA.133: 21 residues within 4Å:- Chain 0: M.34, F.37, L.38
- Chain V: R.67, L.68, A.145, L.148, C.149, F.152, M.165, H.200, H.201, F.246, A.247, V.251, T.261
- Ligands: CLA.132, CLA.134, CLA.135, CLA.136, CLA.140
13 PLIP interactions:11 interactions with chain V, 2 interactions with chain 0,- Hydrophobic interactions: V:L.68, V:L.148, V:F.152, V:F.152, V:F.152, V:F.246, V:A.247, 0:F.37, 0:L.38
- Hydrogen bonds: V:R.67
- Salt bridges: V:R.67
- pi-Cation interactions: V:H.200
- Metal complexes: V:H.201
CLA.134: 22 residues within 4Å:- Chain V: W.32, F.60, F.64, R.67, L.144, L.148, V.244, A.247, A.248, V.251, F.450, H.454, F.457, F.461
- Ligands: CLA.133, CLA.135, CLA.137, CLA.142, CLA.143, CLA.145, BCR.148, UNL.155
14 PLIP interactions:14 interactions with chain V,- Hydrophobic interactions: V:W.32, V:F.60, V:F.64, V:F.64, V:L.144, V:L.148, V:V.244, V:A.247, V:F.457, V:F.457, V:F.461, V:F.461
- Salt bridges: V:R.67
- Metal complexes: V:H.454
CLA.135: 28 residues within 4Å:- Chain V: T.26, V.29, A.30, W.32, A.33, A.37, V.61, F.64, M.65, R.67, L.68, V.95, H.99, L.102, L.142, A.145, G.146, A.204, G.208
- Ligands: CLA.133, CLA.134, CLA.136, CLA.139, CLA.140, CLA.142, CLA.145, BCR.149, UNL.155
10 PLIP interactions:10 interactions with chain V,- Hydrophobic interactions: V:V.29, V:W.32, V:A.33, V:L.68, V:V.95, V:L.102, V:A.145
- Water bridges: V:R.67
- Salt bridges: V:R.67
- Metal complexes: V:H.99
CLA.136: 25 residues within 4Å:- Chain V: L.68, G.69, V.70, W.90, V.95, A.98, H.99, V.101, L.102, L.105, L.148, G.151, F.152, F.155, H.156, F.161, G.162, P.163
- Ligands: SQD.11, UNL.14, CLA.133, CLA.135, CLA.146, BCR.149, UNL.155
10 PLIP interactions:10 interactions with chain V,- Hydrophobic interactions: V:L.68, V:W.90, V:W.90, V:A.98, V:V.101, V:L.148, V:F.155, V:F.161, V:F.161
- Metal complexes: V:H.156
CLA.137: 25 residues within 4Å:- Chain 4: F.35
- Chain 5: F.14
- Chain V: W.32, M.36, Y.39, Q.57, G.58, M.59, F.60, L.323, T.326, G.327, P.328, W.449, F.450, A.453
- Chain X: M.271
- Ligands: BCR.105, CLA.134, CLA.143, BCR.147, BCR.148, PL9.190, LHG.191, LMG.210
9 PLIP interactions:1 interactions with chain 4, 1 interactions with chain 5, 6 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: 4:F.35, 5:F.14, V:Y.39, V:W.449, V:W.449, V:A.453
- Hydrogen bonds: V:G.327
- pi-Stacking: V:F.60
- Metal complexes: H2O.53
CLA.138: 26 residues within 4Å:- Chain 0: L.38, L.42, L.45
- Chain V: L.228, T.235, S.238, S.239, A.242, F.245, F.246, F.462, H.465, I.466, G.469, T.472, L.473
- Chain X: F.110, I.113, M.116, L.117, I.140
- Ligands: CLA.139, CLA.140, CLA.188, UNL.195, DGD.203
19 PLIP interactions:6 interactions with chain X, 3 interactions with chain 0, 10 interactions with chain V,- Hydrophobic interactions: X:F.110, X:I.113, X:M.116, X:L.117, X:L.117, X:I.140, 0:L.38, 0:L.42, 0:L.45, V:A.242, V:F.245, V:F.246, V:F.462, V:F.462, V:I.466, V:L.473
- Hydrogen bonds: V:S.238
- Water bridges: V:S.239
- Metal complexes: V:H.465
CLA.139: 26 residues within 4Å:- Chain 0: T.26, T.27, L.29, M.30, F.33, M.34, L.42
- Chain V: F.138, L.142, V.207, A.211, F.214, H.215, V.218, R.219, P.220, P.221, L.224, L.228
- Chain X: F.110
- Ligands: CLA.132, CLA.135, CLA.138, CLA.140, UNL.195, BCR.202
16 PLIP interactions:11 interactions with chain V, 4 interactions with chain 0, 1 interactions with chain X,- Hydrophobic interactions: V:F.138, V:F.138, V:F.138, V:L.142, V:V.207, V:A.211, V:F.214, V:F.214, V:L.224, V:L.228, 0:L.29, 0:M.30, 0:F.33, 0:L.42, X:F.110
- Salt bridges: V:H.215
CLA.140: 18 residues within 4Å:- Chain V: H.22, L.134, M.137, F.138, H.141, L.142, M.230, T.235, V.236, S.239, S.240, A.243
- Ligands: CLA.133, CLA.135, CLA.138, CLA.139, CLA.142, CLA.145
8 PLIP interactions:7 interactions with chain V, 1 Ligand-Water interactions,- Hydrophobic interactions: V:L.134, V:M.137, V:F.138, V:F.138, V:M.230, V:T.235
- Hydrogen bonds: V:H.141
- Metal complexes: H2O.49
CLA.141: 21 residues within 4Å:- Chain V: W.4, Y.5, R.6, V.7, H.8, T.9, L.237, I.241, F.457, L.460, F.461, F.463, G.464, W.467, H.468, R.471
- Ligands: CLA.142, CLA.143, CLA.144, LHG.158, LHG.191
14 PLIP interactions:14 interactions with chain V,- Hydrophobic interactions: V:W.4, V:H.8, V:T.9, V:L.237, V:L.237, V:I.241, V:F.457, V:F.461, V:F.463
- Hydrogen bonds: V:H.8
- Salt bridges: V:H.8, V:R.471
- pi-Stacking: V:W.467
- Metal complexes: V:H.468
CLA.142: 20 residues within 4Å:- Chain V: H.8, L.11, I.12, L.18, A.21, H.22, H.25, T.26, I.233, V.236, L.237, S.240, V.244
- Ligands: CLA.134, CLA.135, CLA.140, CLA.141, CLA.143, CLA.144, CLA.145
15 PLIP interactions:15 interactions with chain V,- Hydrophobic interactions: V:H.8, V:L.11, V:L.11, V:I.12, V:L.18, V:A.21, V:H.22, V:H.25, V:I.233, V:V.236, V:L.237, V:V.244
- Hydrogen bonds: V:S.240
- Salt bridges: V:H.22
- Metal complexes: V:H.22
CLA.143: 14 residues within 4Å:- Chain V: H.8, H.25, V.29, W.32, F.461
- Ligands: CLA.134, CLA.137, CLA.141, CLA.142, CLA.144, BCR.147, BCR.148, LHG.191, LMG.210
8 PLIP interactions:8 interactions with chain V,- Hydrophobic interactions: V:V.29, V:V.29, V:W.32, V:W.32, V:F.461, V:F.461
- Salt bridges: V:H.8
- Metal complexes: V:H.25
CLA.144: 24 residues within 4Å:- Chain 4: Q.8, V.10
- Chain 5: F.21, L.25
- Chain N: F.8
- Chain V: L.2, V.7, H.8, V.10, L.11, A.21, M.24, L.28, W.114
- Ligands: SQD.99, LMT.101, LMT.102, CLA.141, CLA.142, CLA.143, BCR.147, LHG.158, UNL.209, LMG.210
8 PLIP interactions:5 interactions with chain V, 1 interactions with chain N, 2 interactions with chain 5,- Hydrophobic interactions: V:L.11, V:M.24, V:L.28, V:W.114, N:F.8, 5:F.21, 5:L.25
- Metal complexes: V:H.8
CLA.145: 19 residues within 4Å:- Chain 0: L.6, L.10, L.13, N.14
- Chain V: I.19, H.22, L.23, T.26, L.132, M.137, I.140, H.141, L.144
- Ligands: CLA.134, CLA.135, CLA.140, CLA.142, CLA.146, BCR.149
10 PLIP interactions:4 interactions with chain 0, 6 interactions with chain V,- Hydrophobic interactions: 0:L.6, 0:L.10, 0:L.13, 0:L.13, V:I.19, V:L.132, V:I.140, V:L.144
- Hydrogen bonds: V:H.22
- Metal complexes: V:H.141
CLA.146: 15 residues within 4Å:- Chain 0: T.4, L.6, G.7, L.10
- Chain V: I.19, L.23, A.109, W.112, H.113, L.119, L.121, F.122
- Ligands: CLA.136, CLA.145, BCR.149
14 PLIP interactions:10 interactions with chain V, 4 interactions with chain 0,- Hydrophobic interactions: V:I.19, V:L.23, V:W.112, V:W.112, V:L.119, V:L.121, V:F.122, 0:L.6, 0:L.10
- pi-Stacking: V:W.112, V:W.112
- Metal complexes: V:H.113
- Hydrogen bonds: 0:T.4
- Water bridges: 0:W.5
CLA.161: 21 residues within 4Å:- Chain W: T.76, L.77, L.150, G.153, A.154, L.157, I.206, V.215, H.219, I.222, A.260, M.264, I.267, F.271, V.278, Y.279
- Ligands: CLA.162, CLA.163, CLA.166, CLA.167, BCR.175
12 PLIP interactions:12 interactions with chain W,- Hydrophobic interactions: W:A.154, W:L.157, W:I.206, W:I.222, W:I.222, W:A.260, W:M.264, W:I.267, W:F.271, W:V.278
- Hydrogen bonds: W:Y.279
- Metal complexes: W:H.219
CLA.162: 24 residues within 4Å:- Chain W: W.45, I.69, H.73, L.77, W.79, L.156, K.160, F.164, L.261, M.264, A.268, V.272, Y.279, L.408, H.412, L.415, A.416, F.419
- Ligands: CLA.161, CLA.163, CLA.164, CLA.170, CLA.172, HTG.181
17 PLIP interactions:17 interactions with chain W,- Hydrophobic interactions: W:W.45, W:W.45, W:I.69, W:L.77, W:W.79, W:K.160, W:F.164, W:L.261, W:M.264, W:A.268, W:L.408, W:L.415, W:F.419
- Hydrogen bonds: W:Y.279
- Salt bridges: W:H.73, W:H.412
- Metal complexes: W:H.412
CLA.163: 20 residues within 4Å:- Chain W: I.42, V.43, A.46, T.50, L.70, H.73, I.74, L.77, V.96, H.100, L.261, M.264
- Ligands: CLA.161, CLA.162, CLA.167, CLA.169, CLA.170, CLA.172, CLA.173, LMG.180
7 PLIP interactions:7 interactions with chain W,- Hydrophobic interactions: W:V.43, W:A.46, W:L.77, W:V.96, W:L.261
- Salt bridges: W:H.73
- Metal complexes: W:H.100
CLA.164: 21 residues within 4Å:- Chain 3: P.17, V.21
- Chain U: F.285
- Chain W: W.45, M.49, F.52, Q.66, G.67, I.69, W.407, L.408, S.411, H.412, F.418
- Ligands: CLA.162, CLA.168, CLA.170, DGD.177, DGD.178, LMG.179, LHG.193
14 PLIP interactions:11 interactions with chain W, 1 interactions with chain 3, 1 interactions with chain U, 1 Ligand-Water interactions,- Hydrophobic interactions: W:W.45, W:F.52, W:I.69, W:I.69, W:W.407, W:W.407, W:W.407, W:L.408, W:F.418, W:F.418, 3:V.21, U:F.285
- pi-Stacking: W:W.407
- Metal complexes: H2O.61
CLA.165: 24 residues within 4Å:- Chain 1: V.16, F.19, F.23
- Chain U: F.33, S.124, C.125, M.127, G.128, W.131
- Chain W: F.246, S.255, Y.256, G.259, M.263, L.420, H.423, L.424, A.427, R.431
- Ligands: CLA.117, LMG.127, CLA.167, BCR.175, DGD.176
16 PLIP interactions:4 interactions with chain U, 9 interactions with chain W, 3 interactions with chain 1,- Hydrophobic interactions: U:W.131, U:W.131, U:W.131, W:Y.256, W:Y.256, W:L.420, W:L.420, 1:V.16, 1:F.19, 1:F.23
- pi-Stacking: U:W.131
- Hydrogen bonds: W:Y.256
- Water bridges: W:I.247, W:I.247
- Salt bridges: W:R.431
- Metal complexes: W:H.423
CLA.166: 21 residues within 4Å:- Chain W: L.143, L.147, L.195, L.196, I.225, C.226, G.229, W.232, H.233, T.236, T.237, P.238, F.239, W.241, F.246
- Ligands: CLA.117, LMT.128, CLA.161, CLA.167, BCR.175, DGD.176
8 PLIP interactions:8 interactions with chain W,- Hydrophobic interactions: W:L.147, W:L.147, W:L.195, W:L.196, W:W.232
- Hydrogen bonds: W:F.239
- Salt bridges: W:H.233
- Metal complexes: W:H.233
CLA.167: 23 residues within 4Å:- Chain W: M.139, T.140, I.142, L.143, H.146, L.147, L.150, C.226, W.241, F.246, W.248, Y.253, Y.256, S.257, A.260, L.261, M.264
- Ligands: CLA.161, CLA.163, CLA.165, CLA.166, CLA.169, BCR.175
16 PLIP interactions:15 interactions with chain W, 1 Ligand-Water interactions,- Hydrophobic interactions: W:M.139, W:T.140, W:I.142, W:L.143, W:L.143, W:L.150, W:W.241, W:F.246, W:F.246, W:W.248, W:Y.253, W:Y.256, W:Y.256, W:Y.256, W:L.261
- Metal complexes: H2O.58
CLA.168: 24 residues within 4Å:- Chain W: F.15, W.18, A.19, G.20, N.21, A.22, L.254, L.258, F.418, F.419, V.421, G.422, W.425, H.426, R.429
- Ligands: SQD.119, CLA.164, CLA.169, CLA.170, CLA.171, DGD.177, DGD.178, LMG.179, LHG.193
11 PLIP interactions:11 interactions with chain W,- Hydrophobic interactions: W:A.22, W:L.254, W:L.254, W:F.419, W:V.421, W:W.425
- Hydrogen bonds: W:N.21
- Salt bridges: W:H.426, W:R.429
- pi-Stacking: W:W.425
- Metal complexes: W:H.426
CLA.169: 24 residues within 4Å:- Chain W: N.21, L.24, I.25, L.31, A.34, H.35, H.38, Y.131, W.133, H.146, L.150, G.250, E.251, Y.253, L.254, S.257, L.258, L.261
- Ligands: CLA.163, CLA.167, CLA.168, CLA.170, CLA.171, CLA.172
13 PLIP interactions:13 interactions with chain W,- Hydrophobic interactions: W:N.21, W:L.24, W:I.25, W:L.31, W:A.34, W:H.38, W:Y.131, W:W.133, W:W.133, W:L.150, W:Y.253
- Hydrogen bonds: W:S.257
- Metal complexes: W:H.35
CLA.170: 18 residues within 4Å:- Chain 3: P.20, V.21, L.24
- Chain W: N.21, H.38, L.41, I.42, W.45, L.261, F.418, F.419
- Ligands: CLA.162, CLA.163, CLA.164, CLA.168, CLA.169, CLA.171, LHG.193
10 PLIP interactions:8 interactions with chain W, 2 interactions with chain 3,- Hydrophobic interactions: W:L.41, W:I.42, W:W.45, W:L.261, W:F.418, W:F.419, 3:P.20, 3:V.21
- Hydrogen bonds: W:N.21
- Metal complexes: W:H.38
CLA.171: 32 residues within 4Å:- Chain 3: F.23, L.24, A.27, W.30, Q.31
- Chain W: R.8, W.17, G.20, N.21, R.23, L.24, L.27, K.30, A.34, H.38, L.41, F.109, V.112, I.116
- Ligands: CLA.168, CLA.169, CLA.170, BCR.207, LMG.216
- Chain b: I.20, L.23, N.29, L.30
- Chain c: M.19, V.20, P.24, A.28
22 PLIP interactions:7 interactions with chain W, 3 interactions with chain c, 9 interactions with chain 3, 3 interactions with chain b,- Hydrophobic interactions: W:W.17, W:L.24, W:L.24, W:L.41, W:V.112, c:V.20, c:P.24, c:A.28, 3:F.23, 3:F.23, 3:L.24, 3:A.27, 3:W.30, 3:Q.31, b:I.20, b:L.23, b:L.30
- Hydrogen bonds: W:R.23
- Salt bridges: W:R.8
- Water bridges: 3:Q.31
- pi-Stacking: 3:W.30, 3:W.30
CLA.172: 22 residues within 4Å:- Chain W: L.32, H.35, V.36, A.39, L.107, L.122, F.128, F.129, Y.131, I.142, F.145, H.146, I.148, V.149, I.152, G.153, L.156
- Ligands: CLA.162, CLA.163, CLA.169, CLA.173, BCR.174
17 PLIP interactions:17 interactions with chain W,- Hydrophobic interactions: W:L.32, W:H.35, W:L.122, W:F.128, W:Y.131, W:I.142, W:I.142, W:F.145, W:F.145, W:F.145, W:F.145, W:F.145, W:I.148, W:V.149, W:I.152, W:L.156
- Metal complexes: W:H.146
CLA.173: 16 residues within 4Å:- Chain W: L.32, V.36, V.106, L.107, G.110, Y.113, H.114, P.119, L.122, Y.125, F.129
- Ligands: CLA.163, CLA.172, BCR.174, LMG.180, LMG.216
16 PLIP interactions:16 interactions with chain W,- Hydrophobic interactions: W:L.32, W:L.32, W:V.36, W:V.106, W:L.107, W:Y.113, W:L.122, W:Y.125, W:F.129, W:F.129, W:F.129, W:F.129
- Hydrogen bonds: W:Y.113
- Salt bridges: W:H.114
- pi-Stacking: W:F.129
- Metal complexes: W:H.114
CLA.187: 29 residues within 4Å:- Chain U: M.183, F.206
- Chain X: L.35, W.38, L.112, P.139, V.142, S.145, V.146, F.171, L.172, F.175, Q.176, W.181, T.182, H.187, G.190, V.191, V.194, L.195, L.269, S.272, A.273, V.276
- Ligands: CLA.113, CLA.114, CLA.115, PHO.126, LMG.196
14 PLIP interactions:14 interactions with chain X,- Hydrophobic interactions: X:L.35, X:W.38, X:L.112, X:V.142, X:F.171, X:F.175, X:Q.176, X:T.182, X:V.191, X:V.194, X:L.195, X:L.269
- pi-Stacking: X:W.181
- Metal complexes: X:H.187
CLA.188: 27 residues within 4Å:- Chain 0: L.36, L.38, L.42
- Chain X: I.25, L.26, P.29, C.30, L.33, L.79, L.80, L.81, L.82, W.83, W.94, T.102, F.103, L.106, H.107
- Ligands: PL9.124, CLA.138, UNL.197, SQD.200
- Chain a: G.12, L.13, G.16, A.17, V.19
15 PLIP interactions:2 interactions with chain a, 10 interactions with chain X, 3 interactions with chain 0,- Hydrophobic interactions: a:L.13, a:V.19, X:L.26, X:P.29, X:L.33, X:W.83, X:W.83, X:L.106, 0:L.36, 0:L.38, 0:L.42
- Hydrogen bonds: X:L.82
- Salt bridges: X:H.107
- pi-Stacking: X:F.103
- Metal complexes: X:H.107
- 4 x PHO: PHEOPHYTIN A(Non-covalent)
PHO.6: 23 residues within 4Å:- Chain A: L.41, A.44, T.45, F.48, I.115, Y.126, Q.130, A.146, Y.147, P.150, M.172, G.175, P.279, V.283
- Chain D: L.195, A.198, L.199, I.203, W.243, F.247
- Ligands: CLA.3, CLA.4, LHG.81
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: A:L.41, A:A.44, A:F.48, A:F.48, A:I.115, A:A.146, A:Y.147, A:Y.147, A:P.150, A:V.283, D:L.195, D:A.198
- Hydrogen bonds: A:Y.126, A:Q.130
PHO.15: 30 residues within 4Å:- Chain A: F.206, A.209, L.210, M.214, F.255, L.258, I.259
- Chain D: L.27, A.31, A.34, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, V.266, L.269
- Ligands: CLA.5, PL9.13, CLA.77
19 PLIP interactions:18 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:A.31, D:W.38, D:W.38, D:W.38, D:W.38, D:I.104, D:L.112, D:F.115, D:F.115, D:A.135, D:P.139, D:F.143, D:V.165, D:P.265, D:L.269, A:F.206
- Hydrogen bonds: D:Q.119, D:N.132
- pi-Stacking: D:F.136
PHO.116: 26 residues within 4Å:- Chain U: L.41, A.44, T.45, F.48, I.115, Y.126, Q.130, A.146, Y.147, P.150, M.172, G.175, P.279, V.283
- Chain X: L.195, A.198, L.199, A.202, I.203, W.243, F.247
- Ligands: CLA.113, CLA.114, SQD.121, PL9.190, LHG.192
14 PLIP interactions:12 interactions with chain U, 2 interactions with chain X- Hydrophobic interactions: U:L.41, U:A.44, U:F.48, U:I.115, U:A.146, U:Y.147, U:Y.147, U:P.150, U:P.279, U:V.283, X:L.195, X:A.202
- Hydrogen bonds: U:Q.130, U:Y.147
PHO.126: 27 residues within 4Å:- Chain U: F.206, A.209, L.210, M.214, L.258, I.259
- Chain X: L.27, A.31, L.35, W.38, I.104, G.111, L.112, F.115, Q.119, N.132, A.135, F.136, P.139, F.143, G.164, V.165, P.265, L.269
- Ligands: CLA.115, PL9.124, CLA.187
19 PLIP interactions:17 interactions with chain X, 2 interactions with chain U- Hydrophobic interactions: X:A.31, X:L.35, X:W.38, X:W.38, X:W.38, X:W.38, X:I.104, X:F.115, X:A.135, X:P.139, X:F.143, X:V.165, X:P.265, X:L.269, U:F.206, U:A.209
- Hydrogen bonds: X:Q.119, X:N.132
- pi-Stacking: X:F.136
- 22 x BCR: BETA-CAROTENE(Non-covalent)
BCR.8: 17 residues within 4Å:- Chain A: F.17, V.35, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, W.105, L.106
- Chain H: F.15
- Ligands: CLA.7, UNL.14, UNL.94, HTG.154
Ligand excluded by PLIPBCR.33: 13 residues within 4Å:- Chain 7: F.19
- Chain B: M.24, L.28, C.111, W.114
- Chain L: L.13
- Ligands: CLA.23, CLA.29, CLA.30, BCR.34, SQD.36, LMT.46, BCR.47
Ligand excluded by PLIPBCR.34: 13 residues within 4Å:- Chain B: L.28, G.31, W.32, I.100, V.101, S.103, G.104
- Ligands: CLA.23, CLA.29, BCR.33, SQD.36, BCR.47, LMG.100
Ligand excluded by PLIPBCR.35: 16 residues within 4Å:- Chain 7: F.18, F.22, F.23
- Chain B: L.102, L.105, L.106, L.108, A.109, C.111, W.112
- Ligands: CLA.21, CLA.22, CLA.31, CLA.32, UNL.41, SQD.121
Ligand excluded by PLIPBCR.47: 20 residues within 4Å:- Chain 7: F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain B: W.32, S.35, M.36, Y.39
- Chain U: L.28
- Ligands: CLA.23, CLA.30, BCR.33, BCR.34, SQD.36, LMT.45, SQD.121
Ligand excluded by PLIPBCR.63: 14 residues within 4Å:- Chain C: F.94, V.98, I.102, S.103, V.106, L.107
- Chain J: Y.6
- Chain S: V.51, G.55, N.58, F.59
- Ligands: CLA.61, CLA.62, LMG.69
Ligand excluded by PLIPBCR.64: 17 residues within 4Å:- Chain C: I.191, F.192, L.195, I.206, D.214, V.215, G.218, H.219, I.222, F.246
- Chain H: V.20, F.23, L.24
- Ligands: CLA.50, CLA.54, CLA.55, CLA.56
Ligand excluded by PLIPBCR.79: 14 residues within 4Å:- Chain D: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain F: P.28, T.29, F.32, L.33
- Chain I: V.20, V.24
- Ligands: LMG.86
Ligand excluded by PLIPBCR.92: 14 residues within 4Å:- Chain G: F.33, L.36, F.37, V.39, F.40, I.43, L.54
- Chain Q: T.1, I.2, L.6, F.10
- Ligands: CLA.17, CLA.18, CLA.25
Ligand excluded by PLIPBCR.97: 16 residues within 4Å:- Chain C: A.37, G.40, L.41, L.101, S.104, A.105, G.108
- Chain J: Y.6, F.9, L.16, F.23
- Chain S: L.9, S.16, V.20
- Ligands: CLA.60, BCR.109
Ligand excluded by PLIPBCR.105: 20 residues within 4Å:- Chain A: L.28
- Chain N: I.4, F.8, A.11, I.14, A.15, F.17, F.18, I.21, F.22
- Chain V: W.32, S.35, M.36, Y.39
- Ligands: SQD.11, SQD.99, CLA.137, BCR.147, BCR.148, LMT.156
Ligand excluded by PLIPBCR.109: 24 residues within 4Å:- Chain C: F.44
- Chain I: A.13, T.14, G.17, M.18
- Chain J: L.12, L.16, I.19, L.22, F.23, A.25, L.26, F.28, V.29, A.32
- Chain R: I.12, G.13, G.16, P.17
- Chain S: S.16, F.17
- Ligands: SQD.9, UNL.74, BCR.97
Ligand excluded by PLIPBCR.118: 17 residues within 4Å:- Chain 1: F.15
- Chain U: V.35, L.42, A.43, I.46, C.47, I.50, A.51, A.55, I.96, L.106, P.111
- Ligands: HTG.37, HTG.40, CLA.117, GOL.120, UNL.204
Ligand excluded by PLIPBCR.147: 14 residues within 4Å:- Chain 5: A.10, L.13
- Chain N: F.19
- Chain V: M.24, L.28, C.111, W.114
- Ligands: SQD.99, BCR.105, CLA.137, CLA.143, CLA.144, BCR.148, LMG.210
Ligand excluded by PLIPBCR.148: 14 residues within 4Å:- Chain V: L.28, G.31, W.32, S.35, I.100, V.101, S.103, G.104
- Ligands: BCR.105, CLA.134, CLA.137, CLA.143, BCR.147, LMG.210
Ligand excluded by PLIPBCR.149: 16 residues within 4Å:- Chain N: F.18, F.22, F.23
- Chain V: L.102, L.105, L.108, A.109, C.111, W.112, V.115
- Ligands: SQD.11, CLA.135, CLA.136, CLA.145, CLA.146, UNL.155
Ligand excluded by PLIPBCR.174: 15 residues within 4Å:- Chain 3: Y.6
- Chain W: F.94, V.98, I.102, S.103, V.106, L.107, F.129
- Ligands: CLA.172, CLA.173, LMG.180
- Chain c: V.51, G.55, N.58, F.59
Ligand excluded by PLIPBCR.175: 17 residues within 4Å:- Chain 1: V.20, F.23, L.24
- Chain W: I.191, F.192, Y.194, L.195, I.206, V.215, G.218, H.219, I.222, F.246
- Ligands: CLA.161, CLA.165, CLA.166, CLA.167
Ligand excluded by PLIPBCR.189: 15 residues within 4Å:- Chain 2: V.20, V.24
- Chain X: Y.32, L.33, G.36, G.37, L.39, T.40, F.91
- Chain Z: P.28, T.29, F.32, L.33, I.36
- Ligands: LMG.196
Ligand excluded by PLIPBCR.202: 15 residues within 4Å:- Chain 0: M.30, F.33, M.34, L.36, F.37, V.39, F.40, I.43, L.54
- Ligands: CLA.131, CLA.132, CLA.139
- Chain a: T.1, I.2, F.10
Ligand excluded by PLIPBCR.207: 17 residues within 4Å:- Chain 3: Y.6, F.9, F.23
- Chain W: A.37, G.40, L.41, L.101, I.102, S.104, A.105, G.108, A.115
- Ligands: CLA.171, BCR.208
- Chain c: L.9, L.12, S.16
Ligand excluded by PLIPBCR.208: 23 residues within 4Å:- Chain 2: A.13, T.14, G.17, M.18
- Chain 3: L.16, I.19, L.22, A.25, L.26, F.28, V.29
- Chain W: F.44
- Ligands: SQD.119, UNL.184, BCR.207
- Chain b: I.12, G.13, G.16, P.17
- Chain c: V.13, S.16, F.17, V.20
Ligand excluded by PLIP- 8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
SQD.9: 22 residues within 4Å:- Chain A: L.200, A.203, G.204, N.267, S.270, F.273, F.274, A.277, W.278, V.281
- Chain C: Q.10, A.16, W.18
- Chain D: F.222, R.223
- Chain I: I.21
- Chain J: A.25, F.28
- Ligands: CLA.57, UNL.74, LHG.82, BCR.109
14 PLIP interactions:9 interactions with chain A, 2 interactions with chain C, 2 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: A:A.203, A:F.273, A:A.277, A:W.278, A:V.281, C:W.18, J:A.25, J:F.28, I:I.21
- Hydrogen bonds: A:N.267, A:S.270, A:S.270, C:Q.10
- Water bridges: A:N.267
SQD.11: 18 residues within 4Å:- Chain A: W.20, N.26, R.27, L.28, V.30, I.38, L.42
- Chain N: F.22
- Chain V: L.108, W.112, Y.116
- Ligands: CLA.4, UNL.14, UNL.94, BCR.105, CLA.136, BCR.149, HTG.154
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain V- Hydrophobic interactions: A:N.26, A:L.28, A:V.30, A:I.38, A:L.42, V:L.108
- Hydrogen bonds: A:W.20, A:R.27, A:L.28, V:Y.116
SQD.36: 17 residues within 4Å:- Chain 4: R.14, Y.18
- Chain 5: L.16, Y.26
- Chain 7: C.12, F.19, F.23
- Chain B: R.17, L.28, S.103, F.107, W.114
- Chain K: R.7
- Ligands: CLA.30, BCR.33, BCR.34, BCR.47
13 PLIP interactions:4 interactions with chain 4, 4 interactions with chain B, 2 interactions with chain 5, 2 interactions with chain 7, 1 interactions with chain K- Hydrophobic interactions: 4:Y.18, B:L.28, B:F.107, 5:L.16, 7:F.19, 7:F.19
- Hydrogen bonds: 4:R.14, 4:R.14, 5:Y.26
- Salt bridges: 4:R.14, B:R.17, K:R.7
- Water bridges: B:R.17
SQD.87: 14 residues within 4Å:- Chain D: R.14, R.16
- Chain E: E.7
- Chain F: F.15, T.16, V.17, V.20
- Chain Q: T.23, V.26, I.30, D.34
- Chain T: Q.29, L.33
- Ligands: PL9.13
9 PLIP interactions:4 interactions with chain Q, 2 interactions with chain D, 2 interactions with chain F, 1 interactions with chain T- Hydrophobic interactions: Q:V.26, Q:I.30, Q:I.30
- Hydrogen bonds: Q:D.34, D:R.14, F:V.17, T:Q.29
- Salt bridges: D:R.16
- Water bridges: F:R.18
SQD.99: 18 residues within 4Å:- Chain 4: R.7
- Chain K: R.14, Y.18
- Chain L: V.15, L.16, Y.26
- Chain N: C.12, A.15, L.16, F.23
- Chain V: R.17, S.103, F.107, W.114
- Ligands: BCR.105, CLA.144, BCR.147, UNL.209
15 PLIP interactions:4 interactions with chain K, 4 interactions with chain L, 1 interactions with chain N, 4 interactions with chain V, 2 interactions with chain 4- Hydrophobic interactions: K:Y.18, L:V.15, L:L.16, N:A.15, V:F.107
- Hydrogen bonds: K:R.14, K:R.14, L:Y.26, 4:R.7
- Salt bridges: K:R.14, V:R.17, 4:R.7
- Water bridges: L:E.30, V:R.17, V:R.17
SQD.119: 24 residues within 4Å:- Chain 3: F.28
- Chain U: L.200, A.203, G.204, F.265, N.267, S.270, F.273, A.277, W.278, V.281, G.282
- Chain W: Q.10, A.16, W.17, W.18
- Chain X: S.220, F.222, R.223
- Ligands: CLA.168, LMG.179, UNL.184, LHG.193, BCR.208
19 PLIP interactions:5 interactions with chain W, 2 interactions with chain 3, 10 interactions with chain U, 2 interactions with chain X- Hydrophobic interactions: W:W.17, W:W.18, 3:F.28, 3:F.28, U:L.200, U:A.203, U:F.265, U:A.277, U:W.278, U:V.281
- Hydrogen bonds: W:Q.10, U:N.267, U:S.270, U:S.270, X:S.220
- Water bridges: W:W.17, W:W.17, U:N.267
- Salt bridges: X:R.223
SQD.121: 17 residues within 4Å:- Chain 7: F.22
- Chain B: L.108, W.112, Y.116
- Chain U: W.20, N.26, R.27, L.28, L.42, T.45
- Ligands: CLA.22, BCR.35, BCR.47, PHO.116, UNL.125, LHG.192, UNL.204
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain U- Hydrophobic interactions: B:L.108, U:N.26, U:L.42
- Hydrogen bonds: B:Y.116, B:Y.116, U:W.20, U:R.27, U:L.28
SQD.200: 12 residues within 4Å:- Chain X: R.16
- Chain Y: E.7
- Chain Z: I.14, F.15, T.16, V.17
- Ligands: PL9.124, CLA.188
- Chain a: T.23, L.27, I.30, D.34
6 PLIP interactions:3 interactions with chain Z, 1 interactions with chain X, 2 interactions with chain a- Hydrophobic interactions: Z:I.14, Z:F.15, a:L.27, a:I.30
- Hydrogen bonds: Z:V.17
- Salt bridges: X:R.16
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 6 residues within 4Å:- Chain A: L.102, D.103
- Chain V: W.74, S.75
- Ligands: HTG.151, HTG.154
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.103, A:D.103
GOL.39: 8 residues within 4Å:- Chain B: W.274, D.275, S.277, R.356, R.357, M.358, P.359
- Chain D: E.327
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.275, B:S.277, B:R.356, B:R.356
GOL.42: 6 residues within 4Å:- Chain B: I.12, A.131, L.132, G.231, I.233
- Chain G: Y.17
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain G- Hydrogen bonds: B:L.132, B:L.132, B:I.233, G:Y.17
- Water bridges: B:I.12, B:D.14, B:L.134
GOL.44: 7 residues within 4Å:- Chain B: A.385, S.387, Q.393
- Chain O: L.17, Y.21, G.22, K.24
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.385, B:Q.393
GOL.71: 10 residues within 4Å:- Chain A: L.341, L.343
- Chain C: M.378, T.379, H.380, A.381, G.391, V.392, E.395
- Chain P: K.47
9 PLIP interactions:5 interactions with chain P, 4 interactions with chain C- Hydrogen bonds: P:K.47, C:M.378, C:A.381, C:V.392
- Water bridges: P:S.39, P:K.47, P:K.47, P:K.47, C:E.395
GOL.104: 4 residues within 4Å:- Chain M: P.18, R.40, E.208, Y.238
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:R.40, M:E.208
GOL.120: 6 residues within 4Å:- Chain B: W.74, S.75
- Chain U: D.103
- Ligands: HTG.37, HTG.40, BCR.118
4 PLIP interactions:3 interactions with chain 6, 1 interactions with chain B- Water bridges: 6:K.67, 6:Q.107, 6:Q.107
- Hydrogen bonds: B:S.75
GOL.153: 8 residues within 4Å:- Chain V: I.12, N.13, P.130, A.131, L.132, G.231, N.232, I.233
6 PLIP interactions:6 interactions with chain V- Hydrogen bonds: V:L.132, V:L.132, V:I.233
- Water bridges: V:I.12, V:D.14, V:N.232
GOL.157: 7 residues within 4Å:- Chain V: W.274, D.275, S.277, R.356, R.357, P.359
- Chain X: E.327
5 PLIP interactions:4 interactions with chain V, 1 interactions with chain X- Hydrogen bonds: V:W.274, V:S.277, V:R.356, V:R.356, X:E.327
GOL.160: 10 residues within 4Å:- Chain 9: K.47
- Chain U: L.341, L.343
- Chain W: M.378, T.379, H.380, A.381, G.391, V.392, E.395
5 PLIP interactions:1 interactions with chain 9, 4 interactions with chain W- Hydrogen bonds: 9:K.47, W:M.378, W:A.381, W:V.392, W:E.395
GOL.185: 6 residues within 4Å:- Chain 6: I.8, L.13, K.16, P.18, R.40
- Chain W: N.355
4 PLIP interactions:3 interactions with chain 6, 1 interactions with chain W- Hydrogen bonds: 6:L.13, 6:R.40, 6:R.40, W:N.355
GOL.214: 7 residues within 4Å:- Chain 8: K.104
- Chain 9: I.45, G.133, K.134, Y.137
- Chain U: L.341
- Chain W: E.395
4 PLIP interactions:1 interactions with chain 9, 2 interactions with chain 8, 1 interactions with chain W- Hydrogen bonds: 9:K.134, W:E.395
- Water bridges: 8:K.104, 8:K.104
- 2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
OEX.12: 9 residues within 4Å:- Chain A: D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain C: E.336, R.339
19 PLIP interactions:11 interactions with chain A, 4 interactions with chain C, 4 Ligand-Water interactions- Water bridges: A:D.61
- Metal complexes: A:D.170, A:D.170, A:E.189, A:E.189, A:H.332, A:E.333, A:E.333, A:D.342, A:D.342, A:A.344, C:E.336, C:E.336, H2O.1, H2O.2, H2O.3, H2O.5
- Hydrogen bonds: C:R.339, C:R.339
OEX.123: 10 residues within 4Å:- Chain U: D.61, D.170, E.189, H.332, E.333, H.337, D.342, A.344
- Chain W: E.336, R.339
17 PLIP interactions:9 interactions with chain U, 4 interactions with chain W, 4 Ligand-Water interactions- Metal complexes: U:D.170, U:D.170, U:E.189, U:H.332, U:E.333, U:E.333, U:D.342, U:D.342, U:A.344, W:E.336, W:E.336, H2O.43, H2O.43, H2O.45, H2O.46
- Hydrogen bonds: W:R.339, W:R.339
- 4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
PL9.13: 25 residues within 4Å:- Chain A: F.211, M.214, H.215, L.218, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain D: F.28, P.29, A.31, Y.32
- Chain F: A.21, T.24, L.25
- Chain Q: T.23, L.27
- Ligands: CLA.5, PHO.15, SQD.87, LHG.88
17 PLIP interactions:2 interactions with chain Q, 4 interactions with chain D, 1 interactions with chain F, 10 interactions with chain A- Hydrophobic interactions: Q:T.23, Q:L.27, D:F.28, D:P.29, D:A.31, D:Y.32, F:L.25, A:F.211, A:L.218, A:L.218, A:F.255, A:I.259, A:F.265, A:L.271, A:L.271, A:F.274
- Hydrogen bonds: A:F.265
PL9.80: 33 residues within 4Å:- Chain A: F.52, I.53, I.77
- Chain D: M.188, M.189, A.192, G.193, L.199, L.200, I.203, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264, G.268
- Chain K: L.23, V.26, L.27, L.29
- Chain N: F.10
- Ligands: CLA.4, CLA.23, LHG.81, LHG.98
27 PLIP interactions:16 interactions with chain D, 4 interactions with chain K, 4 interactions with chain A, 3 interactions with chain N- Hydrophobic interactions: D:M.188, D:M.189, D:L.199, D:L.200, D:T.207, D:A.239, D:W.243, D:F.251, D:F.251, D:L.257, D:F.260, D:F.263, D:V.264, D:V.264, K:L.23, K:V.26, K:L.27, K:L.29, A:F.52, A:F.52, A:I.53, A:I.77, N:F.10, N:F.10, N:F.10
- Hydrogen bonds: D:H.204, D:F.251
PL9.124: 25 residues within 4Å:- Chain U: F.211, M.214, H.215, L.218, V.219, Y.246, I.248, A.251, H.252, F.255, I.259, A.263, S.264, F.265, L.271, F.274
- Chain Z: A.21, T.24
- Ligands: CLA.115, PHO.126, LHG.129, CLA.188, SQD.200
- Chain a: T.23, L.27
16 PLIP interactions:2 interactions with chain a, 14 interactions with chain U- Hydrophobic interactions: a:T.23, a:L.27, U:F.211, U:M.214, U:L.218, U:V.219, U:I.248, U:A.251, U:H.252, U:F.255, U:I.259, U:F.265, U:L.271, U:L.271, U:F.274
- Hydrogen bonds: U:F.265
PL9.190: 31 residues within 4Å:- Chain 4: L.23, V.26, L.29
- Chain 7: F.10
- Chain U: F.52, I.53, I.77, I.176
- Chain X: M.188, M.189, A.192, G.193, L.199, H.204, T.207, M.236, A.239, N.240, W.243, I.249, A.250, F.251, L.257, F.260, F.263, V.264
- Ligands: CLA.114, PHO.116, CLA.137, LHG.158, LHG.192
22 PLIP interactions:14 interactions with chain X, 4 interactions with chain U, 2 interactions with chain 4, 2 interactions with chain 7- Hydrophobic interactions: X:M.189, X:A.192, X:L.199, X:T.207, X:A.239, X:W.243, X:F.251, X:F.251, X:L.257, X:F.260, X:F.263, X:V.264, U:F.52, U:I.53, U:I.77, U:I.176, 4:L.23, 4:L.29, 7:F.10, 7:F.10
- Hydrogen bonds: X:T.207, X:F.251
- 18 x UNL: UNKNOWN LIGAND
UNL.14: 8 residues within 4Å:- Chain A: L.13, R.16, F.17, W.20
- Ligands: BCR.8, SQD.11, UNL.94, CLA.136
Ligand excluded by PLIPUNL.41: 6 residues within 4Å:- Chain B: W.90
- Ligands: CLA.20, CLA.21, CLA.22, CLA.32, BCR.35
Ligand excluded by PLIPUNL.74: 4 residues within 4Å:- Chain C: W.17
- Chain J: F.36
- Ligands: SQD.9, BCR.109
Ligand excluded by PLIPUNL.83: 4 residues within 4Å:- Chain D: W.22, E.121
- Chain Q: L.20
- Ligands: UNL.84
Ligand excluded by PLIPUNL.84: 11 residues within 4Å:- Chain B: A.227
- Chain D: D.9, K.13, W.22, R.124, L.125
- Chain Q: F.24
- Ligands: CLA.24, CLA.25, LMT.43, UNL.83
Ligand excluded by PLIPUNL.94: 9 residues within 4Å:- Chain A: L.102
- Chain H: M.1, L.4, T.7, V.11
- Ligands: BCR.8, SQD.11, UNL.14, HTG.154
Ligand excluded by PLIPUNL.95: 5 residues within 4Å:- Chain I: G.25, Y.29, Y.32
- Ligands: DGD.66, LMG.68
Ligand excluded by PLIPUNL.108: 7 residues within 4Å:- Chain D: L.82, W.83, G.89
- Chain Q: S.15, G.16, L.20
- Ligands: CLA.78
Ligand excluded by PLIPUNL.125: 4 residues within 4Å:- Chain U: R.16, F.17, W.20
- Ligands: SQD.121
Ligand excluded by PLIPUNL.155: 6 residues within 4Å:- Chain V: W.90, L.148
- Ligands: CLA.134, CLA.135, CLA.136, BCR.149
Ligand excluded by PLIPUNL.184: 6 residues within 4Å:- Chain 3: F.28, F.36
- Chain W: W.17
- Ligands: SQD.119, LHG.193, BCR.208
Ligand excluded by PLIPUNL.194: 6 residues within 4Å:- Chain X: W.22, I.25, L.26, F.120
- Ligands: UNL.195
- Chain a: L.20
Ligand excluded by PLIPUNL.195: 9 residues within 4Å:- Chain V: A.227, R.229
- Chain X: D.9, K.13, W.22
- Ligands: CLA.138, CLA.139, LMT.150, UNL.194
Ligand excluded by PLIPUNL.197: 7 residues within 4Å:- Chain X: L.82, W.83, G.89
- Ligands: CLA.188
- Chain a: S.15, G.16, L.20
Ligand excluded by PLIPUNL.204: 7 residues within 4Å:- Chain 1: M.1, T.3, L.4, T.7
- Ligands: HTG.40, BCR.118, SQD.121
Ligand excluded by PLIPUNL.205: 4 residues within 4Å:- Chain 2: G.25, Y.32
- Ligands: DGD.177, LMG.179
Ligand excluded by PLIPUNL.209: 5 residues within 4Å:- Chain 4: R.7
- Chain L: I.23
- Ligands: SQD.99, LMT.101, CLA.144
Ligand excluded by PLIPUNL.211: 3 residues within 4Å:- Chain 5: I.23
- Ligands: CLA.30, LMT.212
Ligand excluded by PLIP- 10 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.16: 21 residues within 4Å:- Chain A: S.232, N.234
- Chain B: W.4, Y.5, R.6, F.463, W.467, F.478
- Chain D: R.129, Y.131, I.134, W.256, F.259, F.263, T.267, M.271
- Chain K: L.23
- Ligands: CLA.23, CLA.27, CLA.29, LHG.98
15 PLIP interactions:5 interactions with chain D, 2 interactions with chain A, 7 interactions with chain B, 1 interactions with chain K- Hydrophobic interactions: D:F.263, D:F.263, B:W.4, B:Y.5, B:F.463, B:F.463, K:L.23
- Hydrogen bonds: D:R.129, D:Y.131, A:S.232, A:N.234
- Water bridges: D:Y.131, B:R.6, B:R.6
- Salt bridges: B:R.6
LHG.81: 24 residues within 4Å:- Chain A: R.129
- Chain D: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Chain K: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain N: F.17, A.20, I.21
- Ligands: CLA.3, CLA.4, PHO.6, PL9.80, LHG.98
21 PLIP interactions:5 interactions with chain K, 12 interactions with chain D, 4 interactions with chain N- Hydrophobic interactions: K:Y.18, K:L.29, D:F.247, D:I.249, D:F.251, D:F.260, D:F.260, N:F.17, N:F.17, N:A.20, N:I.21
- Hydrogen bonds: K:N.13, K:T.15, K:S.16, D:S.252, D:S.252, D:N.253
- Water bridges: D:S.252, D:S.252, D:N.253, D:N.253
LHG.82: 22 residues within 4Å:- Chain A: R.140, W.142, L.200, F.273, A.276, W.284, F.285
- Chain C: F.15, W.18, W.425, R.429
- Chain D: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.9, CLA.53, CLA.57, CLA.59, DGD.67
16 PLIP interactions:8 interactions with chain A, 4 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: A:W.142, A:L.200, A:F.273, A:A.276, A:W.284, A:F.285, C:W.18, C:W.425
- Water bridges: A:R.140
- Salt bridges: A:R.140
- Hydrogen bonds: D:N.210, D:A.219, D:S.220, D:T.221, C:R.429, C:R.429
LHG.88: 15 residues within 4Å:- Chain A: L.258, F.260, Y.262, A.263
- Chain D: F.17
- Chain E: T.4, T.5, E.7, R.8, P.9, F.10, S.11
- Chain F: R.18
- Ligands: CLA.5, PL9.13
11 PLIP interactions:7 interactions with chain E, 1 interactions with chain F, 1 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: E:F.10, D:F.17, A:F.260
- Hydrogen bonds: E:T.4, E:T.4, E:T.5, E:E.7, E:F.10, E:S.11, F:R.18, A:Y.262
LHG.98: 23 residues within 4Å:- Chain A: S.232, N.234
- Chain B: P.3, W.4, Y.5
- Chain D: W.256, F.263
- Chain K: E.11, L.12, N.13, S.16, L.19, G.20, L.22
- Chain L: P.18, F.21
- Ligands: CLA.4, LHG.16, CLA.27, CLA.30, PL9.80, LHG.81, LMG.100
14 PLIP interactions:3 interactions with chain A, 2 interactions with chain L, 4 interactions with chain K, 2 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: A:S.232, A:S.232, A:N.234, K:E.11, K:N.13, K:S.16, B:W.4, B:Y.5
- Hydrophobic interactions: L:P.18, L:F.21, K:L.22, D:W.256, D:F.263, D:F.263
LHG.129: 15 residues within 4Å:- Chain U: L.258, F.260, Y.262, A.263
- Chain X: F.17, V.18, L.27, F.28
- Chain Y: P.9, F.10, S.11
- Chain Z: R.18, A.21
- Ligands: CLA.115, PL9.124
12 PLIP interactions:4 interactions with chain U, 3 interactions with chain X, 2 interactions with chain Z, 3 interactions with chain Y- Hydrophobic interactions: U:F.260, U:F.260, U:A.263, X:F.17, X:V.18, X:L.27, Z:A.21, Y:F.10
- Hydrogen bonds: U:Y.262, Z:R.18, Y:F.10, Y:S.11
LHG.158: 24 residues within 4Å:- Chain 4: E.11, L.12, N.13, S.16, L.19, G.20, L.22
- Chain 5: V.17, P.18, F.21
- Chain U: S.232, N.234
- Chain V: P.3, W.4, Y.5
- Chain X: W.256, F.263
- Ligands: CLA.114, CLA.141, CLA.144, PL9.190, LHG.191, LHG.192, LMG.210
11 PLIP interactions:3 interactions with chain U, 2 interactions with chain 5, 2 interactions with chain V, 4 interactions with chain 4- Hydrogen bonds: U:S.232, U:S.232, U:N.234, V:W.4, V:Y.5, 4:E.11, 4:N.13, 4:S.16
- Hydrophobic interactions: 5:V.17, 5:P.18, 4:L.22
LHG.191: 21 residues within 4Å:- Chain 5: P.18
- Chain U: S.232, N.234
- Chain V: W.4, Y.5, R.6, F.463, W.467, F.478
- Chain X: R.129, Y.131, I.134, W.256, F.259, F.263, T.267
- Ligands: CLA.137, CLA.141, CLA.143, LHG.158, LMG.210
12 PLIP interactions:4 interactions with chain V, 5 interactions with chain X, 2 interactions with chain U, 1 interactions with chain 5- Hydrophobic interactions: V:W.4, V:Y.5, X:F.263, X:F.263, 5:P.18
- Water bridges: V:R.6, X:R.129
- Salt bridges: V:R.6
- Hydrogen bonds: X:R.129, X:Y.131, U:S.232, U:N.234
LHG.192: 24 residues within 4Å:- Chain 4: N.13, T.15, S.16, Y.18, L.19, L.29
- Chain 7: F.17, A.20, I.21
- Chain X: I.246, F.247, I.249, A.250, F.251, S.252, N.253, W.256, F.260
- Ligands: CLA.113, CLA.114, PHO.116, SQD.121, LHG.158, PL9.190
15 PLIP interactions:8 interactions with chain X, 4 interactions with chain 7, 3 interactions with chain 4- Hydrophobic interactions: X:F.247, X:I.249, X:F.251, X:F.260, 7:F.17, 7:F.17, 7:F.17, 7:I.21, 4:L.29
- Hydrogen bonds: X:S.252, X:S.252, X:N.253, 4:N.13, 4:S.16
- Water bridges: X:S.252
LHG.193: 20 residues within 4Å:- Chain U: R.140, W.142, F.273, A.276, W.284, F.285
- Chain W: W.18, W.425, R.429
- Chain X: E.209, N.210, A.219, S.220, T.221, F.222
- Ligands: SQD.119, CLA.164, CLA.168, CLA.170, UNL.184
14 PLIP interactions:5 interactions with chain W, 3 interactions with chain X, 6 interactions with chain U- Hydrophobic interactions: W:W.18, W:W.18, W:W.425, U:W.142, U:F.273, U:A.276, U:W.284, U:F.285
- Hydrogen bonds: W:R.429, W:R.429, X:N.210, X:A.219, X:T.221
- Salt bridges: U:R.140
- 11 x HTG: heptyl 1-thio-beta-D-glucopyranoside(Non-covalent)
HTG.37: 13 residues within 4Å:- Chain 6: G.110, G.111
- Chain B: L.41, S.73, W.74, S.75, W.77, E.93, L.97
- Chain U: Y.73
- Ligands: BCR.118, GOL.120, LMT.122
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.74, B:L.97
- Hydrogen bonds: B:S.73, B:S.75, B:E.93
HTG.38: 13 residues within 4Å:- Chain B: K.340, S.418, Y.419, K.422, F.429, E.430, F.431, T.433
- Chain M: Q.174, A.175, K.176, E.177, E.178
8 PLIP interactions:4 interactions with chain M, 4 interactions with chain B- Hydrogen bonds: M:Q.174, M:K.176, M:K.176, B:K.340, B:E.430, B:F.431
- Water bridges: M:E.177
- Hydrophobic interactions: B:Y.419
HTG.40: 9 residues within 4Å:- Chain B: W.74, D.86, G.88, F.89
- Chain U: I.50, L.102
- Ligands: BCR.118, GOL.120, UNL.204
5 PLIP interactions:1 interactions with chain 6, 2 interactions with chain B, 2 interactions with chain U- Water bridges: 6:K.67, U:L.102
- Hydrophobic interactions: B:W.74, U:I.50
- Hydrogen bonds: B:D.86
HTG.70: 5 residues within 4Å:- Chain C: W.79, F.164, G.165
- Ligands: CLA.51, LMG.69
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.79
HTG.85: 7 residues within 4Å:- Chain D: E.1, G.3, W.4, F.5
- Chain G: W.24, P.28
- Ligands: LMT.43
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:F.5
- Hydrogen bonds: D:G.3, D:G.3, D:F.5, D:D.6, D:D.6
HTG.107: 6 residues within 4Å:- Chain P: A.89, E.90, R.96, S.97, D.99, I.100
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain P- Water bridges: C:R.372, P:A.89
- Hydrogen bonds: P:E.90, P:D.99
HTG.151: 10 residues within 4Å:- Chain A: Y.73
- Chain M: G.110, G.111
- Chain V: S.73, S.75, W.77, E.93, L.97
- Ligands: GOL.10, LMT.76
8 PLIP interactions:5 interactions with chain V, 2 interactions with chain A, 1 interactions with chain M- Hydrophobic interactions: V:L.97
- Hydrogen bonds: V:S.73, V:S.75, V:E.93
- Water bridges: V:L.41, A:D.103, A:D.103, M:G.110
HTG.152: 4 residues within 4Å:- Chain V: W.184, A.203, I.206
- Ligands: CLA.131
6 PLIP interactions:6 interactions with chain V- Hydrophobic interactions: V:W.184, V:W.184, V:A.203, V:I.206, V:I.206
- Water bridges: V:W.184
HTG.154: 11 residues within 4Å:- Chain A: I.50, L.102
- Chain V: W.74, D.86, G.88, F.89, L.97
- Ligands: BCR.8, GOL.10, SQD.11, UNL.94
7 PLIP interactions:5 interactions with chain V, 2 interactions with chain A- Hydrophobic interactions: V:W.74, V:L.97, A:I.50
- Hydrogen bonds: V:D.86, V:D.86, V:G.88
- Water bridges: A:L.102
HTG.181: 6 residues within 4Å:- Chain W: W.79, F.163, F.164, G.165
- Ligands: CLA.162, LMG.180
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:W.79
HTG.201: 3 residues within 4Å:- Chain 0: W.24, P.28
- Chain X: W.4
No protein-ligand interaction detected (PLIP)- 14 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.43: 14 residues within 4Å:- Chain B: R.223, K.226, A.227, K.497, D.500
- Chain D: R.2, D.6, D.9, D.10
- Chain G: W.24, M.34
- Chain Q: R.38
- Ligands: UNL.84, HTG.85
11 PLIP interactions:7 interactions with chain B, 1 interactions with chain G, 2 interactions with chain D, 1 interactions with chain Q- Hydrophobic interactions: B:A.227, G:W.24
- Hydrogen bonds: B:K.226, B:K.226, B:K.497, B:D.500, D:R.2, D:D.9, Q:R.38
- Salt bridges: B:R.223, B:K.497
LMT.45: 11 residues within 4Å:- Chain 5: M.1
- Chain 7: M.1, I.4, F.8
- Chain B: S.35, Y.39, A.42
- Chain U: L.72
- Ligands: LMT.46, BCR.47, LMT.122
4 PLIP interactions:3 interactions with chain 7, 1 interactions with chain B- Water bridges: 7:E.2, 7:E.2, 7:T.3
- Hydrophobic interactions: B:A.42
LMT.46: 10 residues within 4Å:- Chain 5: L.8, A.12
- Chain 7: M.1, I.4, F.8
- Chain B: Y.39
- Chain L: L.6
- Ligands: BCR.33, LMT.45, LMG.100
8 PLIP interactions:2 interactions with chain 5, 2 interactions with chain B, 4 interactions with chain 7- Hydrophobic interactions: 5:L.8, 5:A.12, 7:I.4, 7:F.8
- Water bridges: B:K.331, B:L.436, 7:E.2, 7:E.2
LMT.73: 10 residues within 4Å:- Chain A: W.14, E.15
- Chain C: W.241, R.244
- Chain H: V.20, L.24, S.25, G.26, R.30
- Ligands: CLA.55
11 PLIP interactions:1 interactions with chain A, 5 interactions with chain H, 5 interactions with chain C- Water bridges: A:E.15, H:G.26, H:R.30, C:R.244
- Hydrophobic interactions: H:V.20, H:L.24, C:W.241, C:W.241
- Hydrogen bonds: H:R.30, C:R.244, C:R.244
LMT.76: 9 residues within 4Å:- Chain A: I.53, L.72, Y.73
- Chain D: R.294
- Chain M: G.110
- Chain V: L.38, A.42
- Ligands: HTG.151, LMT.156
7 PLIP interactions:2 interactions with chain M, 2 interactions with chain D, 1 interactions with chain A, 2 interactions with chain V- Hydrogen bonds: M:G.110, D:R.294, D:R.294, V:A.42
- Water bridges: M:G.111
- Hydrophobic interactions: A:I.53, V:L.38
LMT.90: 4 residues within 4Å:- Chain E: F.31, W.35, S.39
- Chain F: F.41
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:F.31, E:W.35, F:F.41
LMT.101: 14 residues within 4Å:- Chain 4: R.7, P.9, V.10
- Chain 5: V.20, I.24, Q.28, Q.32
- Chain L: V.27, E.30, S.31, Q.32, Q.33
- Ligands: CLA.144, UNL.209
9 PLIP interactions:3 interactions with chain 4, 3 interactions with chain L, 3 interactions with chain 5- Hydrogen bonds: 4:R.7, 4:V.10, 4:V.10, L:E.30, L:E.30, L:Q.33, 5:Q.28
- Hydrophobic interactions: 5:V.20, 5:I.24
LMT.102: 10 residues within 4Å:- Chain 5: L.6
- Chain L: M.1, Q.5, A.12
- Chain N: I.4, F.8
- Chain V: Y.39
- Ligands: CLA.144, LMT.156, LMG.210
5 PLIP interactions:1 interactions with chain V, 2 interactions with chain N, 2 interactions with chain L- Hydrogen bonds: V:Y.39, L:Q.5
- Hydrophobic interactions: N:I.4, N:F.8, L:A.12
LMT.122: 8 residues within 4Å:- Chain B: L.41, A.42
- Chain U: I.53, L.72, Y.73
- Chain X: R.294
- Ligands: HTG.37, LMT.45
6 PLIP interactions:3 interactions with chain U, 1 interactions with chain B, 2 interactions with chain X- Hydrophobic interactions: U:I.53, U:L.72
- Hydrogen bonds: U:L.72, X:R.294, X:R.294
- Water bridges: B:F.44
LMT.128: 10 residues within 4Å:- Chain 1: L.24, S.25, G.26, R.30
- Chain U: N.12, W.14, E.15
- Chain W: W.241, R.244
- Ligands: CLA.166
7 PLIP interactions:2 interactions with chain 1, 2 interactions with chain U, 3 interactions with chain W- Hydrogen bonds: 1:S.25, 1:R.30, U:N.12, U:E.15, W:R.244, W:R.244
- Hydrophobic interactions: W:W.241
LMT.150: 12 residues within 4Å:- Chain 0: W.24, A.31, M.34
- Chain V: R.223, K.226, A.227, K.497, D.500
- Chain X: F.5, D.6, D.9
- Ligands: UNL.195
11 PLIP interactions:5 interactions with chain V, 3 interactions with chain X, 3 interactions with chain 0- Hydrophobic interactions: V:A.227, X:F.5, 0:W.24, 0:W.24, 0:A.31
- Hydrogen bonds: V:R.223, V:K.226, X:D.6
- Salt bridges: V:R.223, V:K.226
- Water bridges: X:K.13
LMT.156: 11 residues within 4Å:- Chain A: L.72
- Chain L: M.1
- Chain N: M.1, T.3, I.4, V.7
- Chain V: A.42, T.43
- Ligands: LMT.76, LMT.102, BCR.105
5 PLIP interactions:4 interactions with chain N, 1 interactions with chain A- Hydrophobic interactions: N:I.4, N:V.7
- Hydrogen bonds: N:T.3, N:T.3
- Water bridges: A:G.74
LMT.198: 6 residues within 4Å:- Chain 2: V.22
- Chain Y: W.35, S.39
- Chain Z: F.41, I.42, Q.43
4 PLIP interactions:1 interactions with chain Y, 2 interactions with chain Z, 1 interactions with chain 2- Hydrophobic interactions: Y:W.35, Z:F.41, 2:V.22
- Hydrogen bonds: Z:Q.43
LMT.212: 14 residues within 4Å:- Chain 5: V.27, E.30, S.31, Q.32, Q.33, K.34
- Chain K: P.9, V.10
- Chain L: V.20, I.24, Q.28, Q.32
- Ligands: CLA.30, UNL.211
9 PLIP interactions:4 interactions with chain L, 2 interactions with chain K, 3 interactions with chain 5- Hydrophobic interactions: L:V.20, L:I.24
- Hydrogen bonds: L:Q.28, L:Q.32, K:V.10, K:V.10, 5:Q.32, 5:K.34, 5:K.34
- 12 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)(Covalent)
LMG.49: 19 residues within 4Å:- Chain A: F.93, W.97, E.98, F.117, L.120, L.121
- Chain C: L.195, L.196, K.197, S.198, F.200, E.203, W.205, F.266
- Chain H: K.5, Y.9
- Ligands: CLA.7, CLA.54, DGD.65
14 PLIP interactions:4 interactions with chain C, 9 interactions with chain A, 1 interactions with chain H- Hydrophobic interactions: C:W.205, C:F.266, A:F.93, A:F.117, A:L.120, A:L.121, A:L.121, A:L.121
- Water bridges: C:S.198, C:S.198, A:H.92
- Hydrogen bonds: A:W.97, A:E.98, H:Y.9
LMG.68: 14 residues within 4Å:- Chain C: F.52, H.56, Q.66
- Chain I: I.21
- Chain J: D.14, V.18, V.21, L.22
- Chain R: Q.5, I.9
- Ligands: CLA.51, CLA.53, DGD.66, UNL.95
9 PLIP interactions:3 interactions with chain J, 2 interactions with chain R, 3 interactions with chain C, 1 interactions with chain I- Hydrophobic interactions: J:V.18, J:V.21, J:L.22, R:I.9, I:I.21
- Water bridges: R:Q.5, C:H.56
- Hydrogen bonds: C:H.56
- Salt bridges: C:H.56
LMG.69: 16 residues within 4Å:- Chain C: V.43, W.79, D.89, F.91, P.92, V.95, V.96, V.99, H.100, S.103
- Chain S: F.59, V.62
- Ligands: CLA.52, CLA.62, BCR.63, HTG.70
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain S- Hydrophobic interactions: C:V.43, C:W.79, C:V.99
- Hydrogen bonds: C:D.89, S:V.62
LMG.86: 18 residues within 4Å:- Chain D: L.39, Y.57, G.60, C.61, N.62, F.63
- Chain F: T.29, I.36, M.39, Q.40
- Chain I: F.27, G.30, A.31, L.35
- Ligands: CLA.5, DGD.67, BCR.79, MG.96
14 PLIP interactions:4 interactions with chain F, 6 interactions with chain D, 4 interactions with chain I- Hydrophobic interactions: F:T.29, D:L.39, D:F.63, D:F.63, D:F.63, I:F.27
- Hydrogen bonds: F:M.39, F:Q.40, D:F.63, I:G.30
- Water bridges: F:I.42, D:N.62, I:F.27, I:G.36
LMG.100: 20 residues within 4Å:- Chain B: Y.39, T.326, G.327, P.328, K.331, V.456, L.460
- Chain D: I.274
- Chain K: F.35
- Chain L: N.4, L.6, A.10, L.13, F.14
- Ligands: CLA.23, CLA.29, CLA.30, BCR.34, LMT.46, LHG.98
13 PLIP interactions:3 interactions with chain L, 2 interactions with chain K, 7 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: L:L.13, L:F.14, K:F.35, K:F.35, B:V.456, B:L.460, D:I.274
- Hydrogen bonds: L:N.4, B:Y.39, B:T.326, B:T.326
- Water bridges: B:T.326, B:R.443
LMG.110: 13 residues within 4Å:- Chain C: F.109, Y.113, R.117
- Chain S: M.19, Y.27, W.33, K.37, F.41, S.44, W.47, I.48
- Ligands: CLA.60, CLA.62
9 PLIP interactions:4 interactions with chain C, 5 interactions with chain S- Hydrophobic interactions: C:F.109, S:M.19, S:W.47, S:W.47, S:I.48
- Hydrogen bonds: C:Y.113, C:Y.113, C:R.117
- Salt bridges: S:K.37
LMG.127: 19 residues within 4Å:- Chain 1: K.5, Y.9
- Chain U: F.93, W.97, E.98, F.117, L.120, L.121
- Chain W: L.195, L.196, S.198, F.200, E.203, W.205, M.263, F.266
- Ligands: CLA.117, CLA.165, DGD.176
16 PLIP interactions:6 interactions with chain W, 6 interactions with chain U, 4 interactions with chain 1- Hydrophobic interactions: W:W.205, W:F.266, U:F.117, U:L.120, U:L.121, U:L.121
- Hydrogen bonds: W:E.203, U:W.97, U:E.98, 1:K.5, 1:K.5, 1:Y.9, 1:Y.9
- Water bridges: W:S.198, W:S.198, W:S.198
LMG.179: 14 residues within 4Å:- Chain 2: I.21
- Chain 3: D.14, V.18, V.21
- Chain W: H.56, Q.66, L.415
- Ligands: SQD.119, CLA.164, CLA.168, DGD.177, UNL.205
- Chain b: Q.5, I.9
8 PLIP interactions:3 interactions with chain 3, 2 interactions with chain b, 2 interactions with chain W, 1 interactions with chain 2- Hydrophobic interactions: 3:V.18, 3:V.18, 3:V.21, b:I.9, b:I.9, W:L.415, 2:I.21
- Salt bridges: W:H.56
LMG.180: 14 residues within 4Å:- Chain W: V.43, W.79, D.89, F.91, V.95, V.96, V.99, H.100, S.103
- Ligands: CLA.163, CLA.173, BCR.174, HTG.181
- Chain c: F.59
7 PLIP interactions:7 interactions with chain W- Hydrophobic interactions: W:V.43, W:W.79, W:V.96, W:V.99, W:V.99, W:V.99
- Water bridges: W:D.89
LMG.196: 19 residues within 4Å:- Chain 2: F.27, G.30, A.31, L.35
- Chain X: L.35, Y.57, G.60, C.61, N.62, F.63
- Chain Z: I.36, M.39, Q.40
- Ligands: CLA.115, DGD.177, DGD.178, CLA.187, BCR.189, MG.206
13 PLIP interactions:5 interactions with chain 2, 6 interactions with chain X, 2 interactions with chain Z- Hydrophobic interactions: 2:F.27, X:L.35, X:F.63, X:F.63
- Hydrogen bonds: 2:G.30, X:G.60, X:F.63, Z:M.39, Z:Q.40
- Water bridges: 2:F.27, 2:L.35, 2:G.36, X:N.62
LMG.210: 21 residues within 4Å:- Chain 4: F.35
- Chain 5: N.4, L.6, A.10, F.14
- Chain V: Y.39, T.326, G.327, P.328, K.331, F.452, A.453, V.456
- Ligands: LMT.102, CLA.137, CLA.143, CLA.144, BCR.147, BCR.148, LHG.158, LHG.191
14 PLIP interactions:8 interactions with chain V, 2 interactions with chain 4, 4 interactions with chain 5- Hydrophobic interactions: V:F.452, V:A.453, V:V.456, 4:F.35, 4:F.35, 5:A.10, 5:F.14
- Hydrogen bonds: V:T.326, V:T.326, V:K.331, 5:N.4
- Water bridges: V:T.326, V:T.326, 5:N.4
LMG.216: 12 residues within 4Å:- Chain W: F.109, Y.113, R.117
- Ligands: CLA.171, CLA.173
- Chain c: M.19, Y.27, W.33, K.37, F.41, S.44, W.47
8 PLIP interactions:5 interactions with chain c, 3 interactions with chain W- Hydrophobic interactions: c:M.19, c:F.41, c:W.47, c:W.47, W:F.109
- Salt bridges: c:K.37
- Hydrogen bonds: W:Y.113, W:R.117
- 8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
DGD.65: 30 residues within 4Å:- Chain A: L.91, S.148, L.151, A.152, F.155, I.160, I.163
- Chain C: P.199, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.7, LMG.49, CLA.54, CLA.55
20 PLIP interactions:15 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:P.199, C:W.205, C:V.207, C:L.420, A:L.151, A:A.152, A:F.155, A:I.160, A:I.163
- Hydrogen bonds: C:G.202, C:N.276, C:N.276, C:T.277, C:T.277, C:D.342, C:D.342, C:R.344, C:R.344
- Water bridges: C:F.200, C:N.210
DGD.66: 20 residues within 4Å:- Chain A: H.195, F.197
- Chain C: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, T.410, S.411
- Chain I: F.28, Y.32
- Ligands: CLA.53, CLA.57, DGD.67, LMG.68, UNL.95
19 PLIP interactions:3 interactions with chain I, 14 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: I:F.28, I:F.28, C:L.386, C:W.407, A:F.197, A:F.197
- Hydrogen bonds: I:Y.32, C:S.388, C:N.400, C:N.400, C:V.402, C:V.402
- Water bridges: C:K.61, C:K.61, C:E.65, C:E.65, C:G.67, C:G.67, C:N.400
DGD.67: 28 residues within 4Å:- Chain A: Q.199, L.200, F.285, F.300, N.301, F.302, S.305
- Chain C: L.386, N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain D: N.62
- Chain I: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain P: Q.34
- Ligands: CLA.5, CLA.53, DGD.66, LHG.82, LMG.86
13 PLIP interactions:5 interactions with chain C, 3 interactions with chain I, 3 interactions with chain A, 2 interactions with chain P- Hydrogen bonds: C:N.387, C:N.397, C:S.398, C:V.399, I:G.36, I:S.38, A:S.305, P:Q.34, P:Q.34
- Water bridges: C:N.400, I:G.36
- Hydrophobic interactions: A:L.200, A:F.285
DGD.93: 23 residues within 4Å:- Chain B: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain D: G.76, H.77, I.113, I.149, L.152, G.153, S.155, L.281
- Chain G: L.45, Y.48, N.49, V.59, S.60, W.61
- Ligands: CLA.24
20 PLIP interactions:7 interactions with chain B, 5 interactions with chain D, 8 interactions with chain G- Hydrophobic interactions: B:F.249, B:Y.257, B:F.462, D:I.149, D:L.152, D:L.281, G:L.45, G:Y.48, G:Y.48, G:Y.48
- Hydrogen bonds: B:Y.192, B:Y.192, B:S.276, B:S.276, D:H.77, D:S.155, G:N.49, G:V.59, G:S.60, G:W.61
DGD.176: 32 residues within 4Å:- Chain U: L.91, L.151, F.155, L.159, I.160, I.163
- Chain W: P.199, F.200, G.201, G.202, E.203, G.204, W.205, V.207, S.208, V.209, N.210, M.263, F.266, C.270, F.274, N.275, N.276, T.277, D.342, F.343, R.344, L.420
- Ligands: CLA.117, LMG.127, CLA.165, CLA.166
26 PLIP interactions:19 interactions with chain W, 7 interactions with chain U- Hydrophobic interactions: W:P.199, W:P.199, W:F.200, W:W.205, W:V.207, W:F.266, W:F.266, W:L.420, U:L.151, U:F.155, U:F.155, U:F.155, U:F.155, U:L.159, U:I.160
- Hydrogen bonds: W:G.202, W:N.276, W:T.277, W:T.277, W:T.277, W:D.342, W:D.342, W:R.344, W:R.344
- Water bridges: W:F.200, W:N.210
DGD.177: 20 residues within 4Å:- Chain 2: F.28, Y.32
- Chain U: H.195, F.197
- Chain W: E.65, Q.66, G.67, L.386, S.388, N.400, F.401, V.402, W.407, S.411
- Ligands: CLA.164, CLA.168, DGD.178, LMG.179, LMG.196, UNL.205
14 PLIP interactions:10 interactions with chain W, 2 interactions with chain U, 2 interactions with chain 2- Hydrophobic interactions: W:L.386, U:F.197, U:F.197, 2:F.28
- Hydrogen bonds: W:S.388, W:N.400, W:N.400, W:V.402, W:V.402
- Water bridges: W:E.65, W:Q.66, W:G.67, W:G.67, 2:Y.32
DGD.178: 27 residues within 4Å:- Chain 2: F.28, A.31, Y.32, G.36, S.37, S.38
- Chain 9: Q.34
- Chain U: P.196, Q.199, L.200, F.300, N.301, F.302, S.305
- Chain W: N.387, S.388, V.389, N.397, S.398, V.399, N.400
- Chain X: N.62
- Ligands: CLA.115, CLA.164, CLA.168, DGD.177, LMG.196
15 PLIP interactions:5 interactions with chain W, 5 interactions with chain U, 3 interactions with chain 2, 2 interactions with chain 9- Hydrogen bonds: W:N.387, W:N.397, W:S.398, W:V.399, U:S.305, 2:G.36, 9:Q.34, 9:Q.34
- Water bridges: W:N.397, 2:G.36, 2:S.38
- Hydrophobic interactions: U:P.196, U:Q.199, U:L.200, U:L.200
DGD.203: 23 residues within 4Å:- Chain 0: L.45, Y.48, N.49, V.59, S.60, W.61
- Chain V: Y.192, F.249, Y.257, Y.272, Q.273, S.276, Y.278, F.462
- Chain X: H.77, I.113, I.149, L.152, G.153, S.155, L.281
- Ligands: CLA.132, CLA.138
18 PLIP interactions:8 interactions with chain 0, 6 interactions with chain X, 4 interactions with chain V- Hydrophobic interactions: 0:Y.48, 0:Y.48, 0:Y.48, X:I.149, X:L.152, X:L.281, V:Y.257, V:F.462, V:F.462
- Hydrogen bonds: 0:N.49, 0:V.59, 0:S.60, X:H.77, X:S.155, V:Y.192
- Water bridges: 0:S.60, 0:S.60, X:H.77
- 7 x CA: CALCIUM ION(Non-covalent)
CA.72: 6 residues within 4Å:- Chain C: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:T.140, C:T.141, C:H.233, C:I.234, C:T.236
CA.91: 2 residues within 4Å:- Chain F: R.44
- Chain P: E.23
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:R.44, H2O.28, H2O.39
CA.103: 5 residues within 4Å:- Chain M: T.136, S.137, T.138, N.198, V.199
No protein-ligand interaction detected (PLIP)CA.130: 3 residues within 4Å:- Chain 9: E.23
- Chain U: A.309
- Chain Z: R.44
2 PLIP interactions:1 interactions with chain 9, 1 Ligand-Water interactions- Metal complexes: 9:E.23, H2O.68
CA.182: 6 residues within 4Å:- Chain W: N.137, T.140, T.141, H.233, I.234, T.236
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:T.140, W:T.141, W:H.233, W:I.234, W:T.236
CA.183: 5 residues within 4Å:- Chain W: F.4, T.6, D.9, E.11, S.12
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:F.4, W:T.6, W:D.9, W:E.11, W:S.12
CA.213: 3 residues within 4Å:- Chain 6: T.136, N.198, V.199
3 PLIP interactions:2 interactions with chain 6, 1 Ligand-Water interactions- Metal complexes: 6:T.136, 6:V.199, H2O.71
- 2 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.75: 10 residues within 4Å:- Chain A: H.215, E.244, Y.246, H.272
- Chain D: H.204, V.208, Y.234, K.254, H.258
- Ligands: FE2.1
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:H.204, A:E.244
BCT.186: 9 residues within 4Å:- Chain U: H.215, V.219, E.244, Y.246, H.272
- Chain X: H.204, Y.234, H.258
- Ligands: FE2.111
2 PLIP interactions:1 interactions with chain X, 1 interactions with chain U- Hydrogen bonds: X:Y.234, U:H.215
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.89: 18 residues within 4Å:- Chain E: F.10, I.13, R.18, Y.19, H.23, T.26, I.27, L.30
- Chain F: I.14, R.18, W.19, V.22, H.23, A.26, V.27, I.30
- Chain T: A.18, I.22
23 PLIP interactions:2 interactions with chain T, 8 interactions with chain E, 13 interactions with chain F,- Hydrophobic interactions: T:A.18, T:I.22, E:I.13, E:T.26, E:I.27, E:I.27, F:I.14, F:W.19, F:V.22, F:A.26, F:V.27, F:I.30
- Water bridges: E:R.8, F:I.14, F:T.16, F:R.18
- Salt bridges: E:R.18, F:R.18
- pi-Stacking: E:Y.19, F:W.19, F:W.19
- Metal complexes: E:H.23, F:H.23
HEM.199: 16 residues within 4Å:- Chain Y: F.10, I.13, R.18, Y.19, I.22, H.23, T.26, I.27, L.30
- Chain Z: R.18, W.19, V.22, H.23, A.26, V.27, I.30
19 PLIP interactions:10 interactions with chain Y, 9 interactions with chain Z,- Hydrophobic interactions: Y:F.10, Y:I.13, Y:I.22, Y:T.26, Y:I.27, Y:I.27, Z:V.22, Z:A.26, Z:I.30
- Water bridges: Y:Y.19, Z:R.18, Z:W.19
- Salt bridges: Y:R.18, Z:R.18
- pi-Stacking: Y:Y.19, Z:W.19, Z:W.19
- Metal complexes: Y:H.23, Z:H.23
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.96: 5 residues within 4Å:- Chain I: G.30, A.33, G.34, L.35
- Ligands: LMG.86
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:G.30, I:A.33, I:L.35, H2O.28
MG.206: 5 residues within 4Å:- Chain 2: G.30, A.33, G.34, L.35
- Ligands: LMG.196
4 PLIP interactions:3 interactions with chain 2, 1 Ligand-Water interactions- Metal complexes: 2:G.30, 2:A.33, 2:L.35, H2O.68
- 2 x HEC: HEME C(Covalent)
HEC.106: 24 residues within 4Å:- Chain P: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
20 PLIP interactions:20 interactions with chain P,- Hydrophobic interactions: P:A.36, P:T.46, P:N.49, P:L.52, P:L.54, P:L.72, P:Y.75, P:Y.75, P:Y.75, P:I.88, P:P.93, P:I.115, P:I.119
- Hydrogen bonds: P:D.53, P:Y.82
- Water bridges: P:N.49, P:Y.75
- pi-Stacking: P:Y.75
- Metal complexes: P:H.41, P:H.92
HEC.215: 24 residues within 4Å:- Chain 9: A.36, C.37, S.39, C.40, H.41, T.46, T.48, N.49, L.52, D.53, L.54, T.58, L.59, L.72, Y.75, M.76, T.81, Y.82, I.88, H.92, P.93, M.104, I.115, I.119
16 PLIP interactions:16 interactions with chain 9,- Hydrophobic interactions: 9:T.46, 9:N.49, 9:L.52, 9:L.54, 9:L.72, 9:Y.75, 9:I.88, 9:P.93, 9:I.115, 9:I.119
- Hydrogen bonds: 9:D.53, 9:Y.82
- Water bridges: 9:N.49
- pi-Stacking: 9:Y.75
- Metal complexes: 9:H.41, 9:H.92
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Li, H. et al., Capturing structural changes of the S 1 to S 2 transition of photosystem II using time-resolved serial femtosecond crystallography. Iucrj (2021)
- Release Date
- 2021-04-28
- Peptides
- Photosystem II protein D1: AU
Photosystem II CP47 reaction center protein: BV
Photosystem II CP43 reaction center protein: CW
Photosystem II D2 protein: DX
Cytochrome b559 subunit alpha: EY
Cytochrome b559 subunit beta: FZ
Photosystem II reaction center protein H: G0
Photosystem II reaction center protein I: H1
Photosystem II reaction center protein J: I2
Photosystem II reaction center protein K: J3
Photosystem II reaction center protein L: K4
Photosystem II reaction center protein M: L5
Photosystem II manganese-stabilizing polypeptide: M6
Photosystem II reaction center protein T: N7
Photosystem II 12 kDa extrinsic protein: O8
Cytochrome c-550: P9
Photosystem II reaction center protein X: Qa
Photosystem II reaction center protein Ycf12: Rb
Photosystem II reaction center protein Z: Sc
Photosystem II protein Y: T - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AU
aB
BV
bC
CW
cD
DX
dE
EY
eF
FZ
fG
H0
hH
I1
iI
J2
jJ
K3
kK
L4
lL
M5
mM
O6
oN
T7
tO
U8
uP
V9
vQ
Xa
xR
Yb
yS
Zc
zT
R - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7cjj.1
Photosystem II structure in the S2 state
Photosystem II protein D1
Toggle Identical (AU)Photosystem II CP47 reaction center protein
Toggle Identical (BV)Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Toggle Identical (G0)Photosystem II reaction center protein I
Toggle Identical (H1)Photosystem II reaction center protein J
Photosystem II reaction center protein K
Toggle Identical (J3)Photosystem II reaction center protein L
Toggle Identical (K4)Photosystem II reaction center protein M
Photosystem II manganese-stabilizing polypeptide
Toggle Identical (M6)Photosystem II reaction center protein T
Toggle Identical (N7)Photosystem II 12 kDa extrinsic protein
Cytochrome c-550
Toggle Identical (P9)Photosystem II reaction center protein X
Toggle Identical (Qa)Photosystem II reaction center protein Ycf12
Toggle Identical (Rb)Photosystem II reaction center protein Z
Toggle Identical (Sc)Photosystem II protein Y
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