P12955 | SWISS-MODEL Repository

P12955 (PEPD_HUMAN) Homo sapiens (Human)

Xaa-Pro dipeptidase UniProtKB InterPro STRING Interactive Modelling

493 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 1 identical sequence: Homo sapiens: A0A140VJR2

Available Structures

21 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and Cacodylate ligand	6h2p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	6-489	99.79	4×MN; 2×CAC; 5×GOL;
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Crystal Structure of delTyr231 mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	6-486	100	4×MN; 2×OH; 2×GLY; 2×PRO; 13×GOL; 2×NA; 1×CL;
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Crystal Structure of delGlu452 mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	6-484	100	4×MN; 2×OH; 2×GLY; 2×PRO; 2×GOL;
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Crystal Structure of Asp276Asn mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-490	99.79	2×MN; 3×NA; 2×GLY; 2×PRO; 10×GOL;
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Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and GlyPro ligand	5mby PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-490	99.79	4×MN; 2×OH; 2×GLY; 2×PRO; 6×GOL;
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Crystal Structure of Human Prolidase S202F variant expressed in the presence of chaperones	6sre PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	99.79	2×MN; 9×GOL; 2×MH2; 2×GLY; 2×PRO;
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Crystal Structure of Wild-Type Human Prolidase with Mg ions and LeuPro ligand	5m4l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	100	4×MG; 2×OH; 2×LEU; 2×PRO; 7×GOL; 1×NA;
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Crystal Structure of Ser202Phe mutant of Human Prolidase with Mn ions and GlyPro ligand	5mbz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	99.79	4×MN; 2×OH; 2×GLY; 2×PRO; 4×GOL; 2×NA; 1×CL;
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Crystal Structure of Glu412Lys mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	99.79	2×MN; 2×OH; 2×GLY; 2×PRO; 2×NA; 10×GOL;
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Crystal Structure of Wild-Type Human Prolidase with GlyPro ligand	5m4j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	100	4×NA; 2×GLY; 2×PRO; 5×GOL;
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Crystal Structure of Wild-Type Human Prolidase with Mn ions and Pro ligand	5m4q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	100	4×MN; 2×OH; 2×PRO; 7×GOL;
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Crystal Structure of Human Prolidase G278N variant expressed in the presence of chaperones	6srf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-489	99.79	2×MN; 2×NA; 1×GOL; 2×GLY; 2×PRO;
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Crystal Structure of Wild-Type Human Prolidase with Mn ions	5m4g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	100	4×MN; 2×OH; 7×GOL;
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Crystal Structure of Arg470His mutant of Human Prolidase with Mn ions and GlyPro ligand	6qsc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	99.79	2×MN; 2×MH2; 9×GOL; 2×GLY; 2×PRO;
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Crystal Structure of Gly278Asp mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	99.79	2×MN; 2×NA; 2×GLY; 2×PRO; 7×GOL;
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Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and LeuPro ligand	6h2q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	99.79	4×MN; 3×GOL; 2×LEU; 2×PRO;
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Crystal Structure of Arg470His mutant of Human Prolidase with Mn ions	6qsb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	99.79	4×MN; 7×GOL;
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Crystal Structure of Human Prolidase G448R variant expressed in the presence of chaperones	6srg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-488	99.78	4×MN; 2×OH; 2×GLY; 2×PRO; 1×GOL;
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Crystal Structure of Gly448Arg mutant of Human Prolidase with Mn ions and GlyPro ligand	5mc4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-487	99.78	4×MN; 2×OH; 2×GLY; 2×PRO; 2×GOL;
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Crystal structure of human Prolidase	2iw2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-483	99.79	5×NA;
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Crystal Strcture of Human Prolidase	2okn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	6-482	99.79	4×MN; 3×PI;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6h2q.1.A	homo-2-mer	0.94	6-488	4×MN; 2×LEU; 2×PRO;	99.80
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

3 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	6qsc.1.A	homo-2-mer	0.89	6-447	2×MN; 2×MH2; 2×GLY;	92.04
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Isoform 2	5mby.1.A	homo-2-mer	0.83	6-449	4×MN; 2×OH; 2×GLY; 2×PRO;	100.00
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Isoform 3	6qsc.1.A	homo-2-mer	0.87	6-424	2×MN; 2×MH2; 2×GLY;	93.01
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P12955 (PEPD_HUMAN) Homo sapiens (Human)

Xaa-Pro dipeptidase UniProtKBInterProSTRINGInteractive Modelling

Available Structures

21 Experimental Structures

1 SWISS-MODEL model

3 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Xaa-Pro dipeptidase UniProtKB InterPro STRING Interactive Modelling