P17405 | SWISS-MODEL Repository

P17405 (ASM_HUMAN) Homo sapiens (Human)

Sphingomyelin phosphodiesterase UniProtKB InterPro STRING Interactive Modelling

631 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4)

It is possible new templates exist for this target since these models were created.

Available Structures

4 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Crystal structure of human acid sphingomyelinase	5jg8 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	homo-2-mer	84-613	5×NAG; 2×NAG; 4×ZN; 2×ACT; 5×NAG;
Assess
aSMase with zinc	5i81 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	86-613	1×NAG; 1×NAG; 1×MAN; 6×NAG; 1×BMA; 2×ZN; 11×SO4;
Assess
aSMase with zinc and phosphocholine	5i85 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	86-613	1×NAG; 1×NAG; 1×NAG; 3×NAG; 2×ZN; 11×SO4; 1×PC;
Assess
aSMase with zinc	5i8r SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	86-613	2×NAG; 5×NAG; 1×BMA; 1×MAN; 2×ZN;
Assess

2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5fi9.1.A	monomer	0.89	88-613	2×ZN;	88.26
Assess
5jg8.1.A	homo-2-mer	0.89	84-613	1×NAG; 1×NAG; 4×ZN;	100.00
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

6 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	5fi9.2.A	monomer	0.88	88-570	2×ZN;	85.92
Assess
Isoform 2	5jg8.1.A	homo-2-mer	0.85	84-569	1×NAG; 1×NAG; 4×ZN; 1×NAG;	97.96
Assess
Isoform 3	5fi9.2.A	monomer	0.87	88-558	2×ZN;	87.26
Assess
Isoform 3	5jg8.1.A	homo-2-mer	0.86	84-557	1×NAG; 1×NAG; 4×ZN; 1×NAG;	99.24
Assess
Isoform 4	5fi9.1.A	monomer	0.89	88-612	2×ZN;	88.24
Assess
Isoform 4	5jg8.1.A	homo-2-mer	0.89	84-612	4×ZN;	100.00
Assess

Alignments