P20433 (RPB4_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

DNA-directed RNA polymerase II subunit RPB4 UniProtKBInterProSTRINGInteractive Modelling

221 aa; Sequence (Fasta) Identical sequences: Saccharomyces cerevisiae: N1P3Y0; G2WGN0; D3UF54; C7GPZ0; A6ZQI9; B3LPX8; Saccharomyces sp. 'boulardii': A0A0L8VMV8; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GI70

Sequence Features

 49-217RNA polymerase subunit RPB4/RPC9
IPR005574PF03874

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Arrested RNA Polymerase II elongation complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
PEG;ZN;EPE;MG;ACT;3po21-221
Structure of RNA Polymerase II-Tfg1 peptide complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;
ZN;MG;5ip71-221
8-oxoguanine containing RNA polymerase II elongation complex D Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;3i4m1-221
Structure of RNA Polymerase II-TFIIF complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P41895;
ZN;MG;5ip91-221
8-oxoguanine containing RNA polymerase II elongation complex E Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;3i4n1-221
RNA polymerase II elongation complex in the presence of 3d-Napht-A Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;AHW;5ot23-221
Complete RNA polymerase II elongation complex I with a T-U mismatch Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;3hou3-221
Structure of RNA polymerase II-TFIIB complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;
ZN;MG;4bbr3-221
RNA Polymerase II elongation complex containing a CPD Lesion Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a933-221
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3d3-221
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
APC;ZN;MG;4a3e3-221
Complete RNA polymerase II elongation complex II Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3hov3-221
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3b3-221
RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3c3-221
RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
APC;ZN;MG;4a3f3-221
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3g3-221
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3k3-221
RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
APC;ZN;MG;4a3l3-221
Structure of an initially transcribing RNA polymerase II-TFIIB complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;
ZN;MG;4bbs3-221
Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3how3-221
Complete RNA polymerase II elongation complex V Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3hox3-221
Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3hoz3-221
RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;G2P;4a3j3-221
12 Subunit RNA Polymerase II at Room Temperature collected using SFX Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;5u5q3-221
RNA Polymerase II binary complex with DNA Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;4a3i3-221
Elongation complex of RNA polymerase II with artificial RdRP scaffold Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;2r923-221
RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
APC;ZN;MG;4a3m3-221
Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;2r933-221
Crystal structure of RNA Polymerase II in complex with TFIIB Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422;
ZN;3k1f3-221
RNA polymerase II variant containing A Chimeric RPB9-C11 subunit Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3qt13-221
Structure of transcribing RNA polymerase II-nucleosome complex Heteromer
P02281; P04050; P06897; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P62799; P84233;
ZN;MG;6i843-221
Mediator-RNA Polymerase II Pre-Initiation Complex Heteromer
P04050; P06839; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P33308; P34087; P34162; P35189; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q08278; Q12343; Q3E7C1; Q99278;
ZN;MG;5sva3-221
the P-lobe of RNA polymerase II pre-initiation complex Heteromer
P04050; P06839; P07273; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q3E7C1;
MG;ZN;5fmf3-221
Architecture of the RNA polymerase II-Mediator core transcription initiation complex Heteromer
A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P34087; P38902; P40422; P41896;
ZN;MG;4v1n3-221
Architecture of the RNA polymerase II-Mediator core transcription initiation complex Heteromer
A0A0H2UKZ8; P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32569; P32570; P32585; P34087; P34162; P38304; P38782; P38902; P40422; P41896; Q99278;
ZN;MG;4v1o3-221
elongating RNA Polymerase II-Bye1 TLD complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;
ZN;EPE;MG;4by74-221
Arrested RNA polymerase II-Bye1 complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;
ZN;MG;4bxx4-221
Arrested RNA Polymerase II reactivation intermediate Heteromer
P04050; P07273; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;EPE;MG;PGE;ACT;3po34-221
Complete RNA polymerase II elongation complex VI Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3hoy4-221
Alpha-amanitin inhibited complete RNA polymerase II elongation complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422; P85421;
ZN;MG;2vum4-221
elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;
APC;ZN;MG;4by14-221
'Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription b... Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;5c3e4-221
Refined RNA Polymerase II-TFIIS complex Heteromer
P04050; P07273; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;1y1v4-221
Complete RNA Polymerase II-RNA inhibitor complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;2b634-221
Cisplatin lesion containing RNA polymerase II elongation complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;CPT;MG;2r7z4-221
CPD lesion containing RNA Polymerase II elongation complex A Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;2ja54-221
CPD lesion containing RNA Polymerase II elongation complex C Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;2ja74-221
CPD lesion containing RNA Polymerase II elongation complex D Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;2ja84-221
Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;1wcm4-221
12-Subunit RNA Polymerase II Refined with Zn-SAD data Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3fki4-221
'Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription b... Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
5c444-221
Yeast RNAP II containing poly(A)-signal sequence in the active site Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;3h3v4-221
Complete RNA Polymerase II elongation complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;1y1w4-221
'Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription b... Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;5c4x4-221
RNA Polymerase II-TFIIS-DNA/RNA complex Heteromer
P04050; P07273; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
1y1y4-221
CPD lesion containing RNA Polymerase II elongation complex B Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;2ja64-221
12-subunit RNA Polymerase II Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;2b8k4-221
Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;G2P;1y774-221
RNA Polymerase II-Bye1 complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P36106; P38902; P40422;
ZN;MG;4bxz4-221
Ternary complex of RNA Pol II, transcription scaffold and Rad26 Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40352; P40422;
ZN;MG;5vvr4-221
RNA pol II elongation complex Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;5vvs4-221
Orientation of RNA polymerase II within the human VP16-Mediator-pol II-TFIIF assembly Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902;
MG;ZN;3j0k4-221
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
3j1n4-221
Complete 12-subunit RNA polymerase II Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
1nt910-221
'Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription b... Heteromer
P04050; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
ZN;MG;5c4a14-221
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH Heteromer
P04050; P06839; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;
16×ZN;MG;SF4;5oqj24-221
Structure of a yeast closed complex (core CC1) Heteromer
P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P38902; P40422; P41895; P41896;
ZN;MG;6gyk24-221
Structure of a yeast closed complex with distorted DNA (core CCdist) Heteromer
P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;
10×ZN;MG;6gyl24-221
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR Heteromer
P04050; P06839; P08518; P13393; P16370; P19263; P20434; P20435; P20436; P22139; P25046; P27999; P29055; P32569; P32570; P32585; P32773; P32774; P32776; P33308; P34087; P34162; P36100; P36145; P38304; P38633; P38782; P38902; P40422; P41895; P41896; P47822; Q00578; Q02939; Q03290; Q04673; Q06213; Q08278; Q12004; Q12343; Q3E7C1; Q99278;
16×ZN;MG;SF4;5oqm24-221
Structure of a yeast closed complex with distorted DNA (CCdist) Heteromer
P04050; P06839; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P32776; P34087; P36100; P36145; P38902; P40422; P41895; P41896; Q00578; Q02939; Q03290; Q04673; Q12004; Q3E7C1;
MG;SF4; 16×ZN;6gym24-221
Transcription initiation complex structures elucidate DNA opening (OC) Heteromer
P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;
10×ZN;MG;5fyw24-221
Transcription initiation complex structures elucidate DNA opening (CC) Heteromer
P04050; P08518; P13393; P16370; P20434; P20435; P20436; P22139; P27999; P29055; P32773; P32774; P34087; P36100; P36145; P38902; P40422; P41895; P41896;
10×ZN;MG;5fz524-221
Crystal structure of yeast subcomplex of Rpb4 and Rpb7 Heteromer
P34087;
1y1446-221
RNA polymerase II-TFIIS complex Heteromer
P04050; P07273; P08518; P16370; P20434; P20435; P20436; P22139; P27999; P34087; P38902; P40422;
MG;ZN;1pqv86-221