P29375 (KDM5A_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 5A UniProtKBInterProSTRINGInteractive Modelling

1690 aa; Sequence (Fasta) ; (Isoform 2)

Available Structures

46 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Solution structure of the PHD1 domain of histone demethylase KDM5A in complex with a histone H3(1-1…
7klr
 Heteromer
P68431; 		287-344
2×ZN;
Assess
Crystal structure of JARID1A-PHD3 complexed with H3(1-9)K4me3 peptide
3gl6
 Heteromer
Q92133; 		1609-1659
6×ZN;
Assess
Crystal Structure of Jarid1a PHD finger bound to histone H3C4me3 peptide
5c11
 Heteromer
P68431; 		1609-1659
2×ZN;
Assess
Crystal structure of KDM5A in complex with a naphthyridone inhibitor
5k4l
homo-2-mer12-785
2×NI; 4×ZN; 2×6QN;
Assess
Crystal structure of pyrrolidine amide inhibitor [(3S)-3-(4-bromo-1H-pyrazol-1-yl)pyrrolidin-1-yl][…
5v9p
monomer12-785
1×NI; 2×ZN; 1×90S; 1×SO4;
Assess
Crystal structure of selective pyrrolidine amide KDM5a inhibitor N-{(3R)-1-[3-(propan-2-yl)-1H-pyra…
5v9t
monomer12-785
1×NI; 2×ZN; 1×90V;
Assess
Structure of histone lysine demethylase KDM5A in complex with selective inhibitor
5ceh
monomer12-785
1×NI; 2×ZN; 1×50P;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(1-methylpyrrolidin-2-yl)ethox…
6bgy
monomer11-588
1×DLJ; 1×MN; 4×EDO; 2×DMS; 1×GOL;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR GSK-J1
6dq4
monomer11-588
1×K0I; 1×MN; 5×GOL; 3×SO4; 2×DMS;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (R)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrroli…
6bh2
monomer11-588
1×MN; 2×GOL; 1×90V; 5×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N49 i.e. 2-((2-chlorophenyl)(2-(1-methylpyrrolidin-2…
6dq8
monomer11-588
1×H6S; 1×H6T; 1×MN; 2×DMS; 1×SO4; 1×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)methyl)…
6bgv
monomer11-588
1×DQG; 1×MN; 4×GOL; 2×DMS; 4×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(4,4-difluoropiperidin-1-yl)et…
6bgw
monomer11-588
1×DKS; 1×MN; 5×GOL; 1×DMS;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(propoxy)methyl)-1H-pyrrolo[3,2-b…
6bgu
monomer11-588
1×DKP; 1×MN; 1×DMS; 2×GOL; 4×EDO; 1×SO4;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N68 i.e. 2-(1-(2-(piperidin-1-yl)ethyl)-1H-benzo[d]i…
6dqf
monomer11-588
1×H61; 1×MN;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(1-methyl-1H-imidazol-2-yl)eth…
6bgz
monomer11-588
1×DNV; 1×MN; 2×GOL;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N67 i.e. 2-(5-phenyl-4-(phenyl(2-(piperidin-1-yl)eth…
6dqe
monomer11-588
1×H6A; 1×MN; 1×GOL; 3×DMS;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (S)-N-(1-(3-isopropyl-1H-pyrazole-5-carbonyl)pyrroli…
6bh3
monomer11-588
1×DQJ; 1×MN; 1×DMS; 2×GOL; 5×EDO;
Assess
Linked KDM5A JMJ Domain Bound to the Covalent Inhibitor N69 i.e. [2-((3-acrylamidophenyl)(2-(piperi…
6dq9
monomer11-588
1×H74; 1×MN; 1×GOL; 2×DMS; 2×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N50 i.e. 2-(4-((2-(dimethylamino)ethyl)(ethyl)carbam…
6dqc
monomer11-588
1×H5Y; 1×MN; 1×DMS; 1×GOL; 1×SO4;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N8 ( 5-methyl-7-oxo-6-(propan-2-yl)-4,7-dihydropyraz…
5ive
monomer11-588
1×6E8; 1×MN;
Assess
LINKED KDM5A JMJ DOMAIN FORMING COVALENT BOND TO INHIBITOR N71 i.e. 2-((3-(4-(dimethylamino)but-2-e…
6dqb
monomer11-588
1×H77; 1×HZV; 1×HZM; 1×MN; 2×GOL; 2×DMS;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE POTENTIAL HYDROLYSIS PRODUCT OF INHIBITOR N45 i.e. 3-((6-(4-(2…
6dq7
monomer11-588
1×H6M; 1×MN; 1×EDO; 1×GOL;
Assess
Linked KDM5A JMJ Domain Bound to Inhibitor N70 i.e.[2-((3-aminophenyl)(2-(piperidin-1-yl)ethoxy)met…
6dqa
monomer11-588
1×H6V; 1×MN; 2×GOL; 3×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (S)-2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)met…
6bh1
monomer11-588
1×DQG; 1×MN; 1×DMS; 2×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR (R)-2-((2-chlorophenyl)(2-(piperidin-1-yl)ethoxy)met…
6bh0
monomer11-588
1×DO1; 1×MN; 1×DMS;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 5-(1-(tert-butyl)-1H-pyrazol-4-yl)-6-isopropyl-7-oxo…
6bh4
monomer11-588
1×DQS; 1×MN; 7×EDO; 1×GOL;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor 2-(((2-((2-(dimethylamino)ethyl)(ethyl)amino)-2-oxoe…
5iwf
monomer11-588
1×LQT; 1×MN;
Assess
A High Resolution Structure of a Linked KDM5A Jmj Domain with Alpha-Ketoglutarate
5ivb
monomer12-588
1×AKG; 1×MN; 4×GOL;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N16 [3-(2-(4-chlorophenyl)acetamido)isonicotinic aci…
5ivy
monomer12-588
1×6EO; 1×MN;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N11 [3-({1-[2-(4,4-difluoropiperidin-1-yl)ethyl]-5-f…
5ivj
monomer12-588
1×6ED; 1×MN; 1×GOL; 1×DMS;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N3 (4'-[(2-phenylethyl)carbamoyl][2,2'-bipyridine]-4…
5ivc
monomer12-588
1×6E7; 1×MN; 3×EDO; 1×GOL;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N44 i.e. 3-((2-(pyridin-2-yl)-6-(4-(vinylsulfonyl)-1…
6dq6
monomer12-588
1×H6J; 1×MN; 1×GOL; 1×DMS;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N19 [2-(5-((4-chloro-2-methylbenzyl)oxy)-1H-pyrazol-…
5iw0
monomer12-588
1×6EP; 1×AKG; 1×MN; 2×EDO; 2×GOL;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(3-(piperidin-1-yl)propoxy)methyl…
6bh5
monomer12-588
1×DNY; 1×MN; 5×EDO; 1×GOL;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N10 8-(1-methyl-1H-imidazol-4-yl)-2-(4,4,4-trifluoro…
5ivf
monomer12-588
1×6EB; 1×MN;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor C49 (2-{[(2-{[(E)-2-(dimethylamino)ethenyl](ethyl)am…
5isl
monomer12-588
1×MMK; 1×MN; 1×GOL; 1×EDO;
Assess
Linked KDM5A Jmj Domain Bound to the Inhibitor N12 [3-((1-methyl-1H-pyrrolo[2,3-b]pyridin-3-yl)amin…
5ivv
monomer12-588
1×6EN; 1×MN;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)((4,4-difluorocyclohexyl)methoxy)…
6bgx
monomer12-588
1×DKV; 1×MN; 2×GOL; 2×EDO;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N53 i.e. 2-(5-([1,1'-biphenyl]-3-yl)-4-(1-(2-(piperi…
6dqd
monomer12-588
1×H67; 1×MN; 2×GOL; 2×DMS;
Assess
A Linked Jumonji Domain of the KDM5A Lysine Demethylase
5e6h
monomer12-588
1×MN; 1×AKG; 2×GOL;
Assess
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR N43 i.e. 3-((6-(4-acryloyl-1,4-diazepan-1-yl)-2-(pyr…
6dq5
monomer12-587
1×H6G; 1×MN;
Assess
NMR structure of the ARID domain from the histone H3K4 demethylase RBP2
2jxj
monomer85-175
Assess
Solution structure of the PHD1 domain of histone demethylase KDM5A
7klo
monomer287-344
2×ZN;
Assess
Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3
2kgi
monomer1609-1659
2×ZN;
Assess
Solution Structure of JARID1A C-terminal PHD finger
2kgg
monomer1609-1659
2×ZN;
Assess

2 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5k4l.1.Amonomer0.6612-785
1×NI; 2×ZN; 1×6QN;100.00
Assess
2e6r.1.Amonomer0.61292-363
1×ZN;65.28
Assess

2 SWISS-MODEL models built on isoform sequence

TemplateIsoformOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 25k4l.1.Amonomer0.6512-785
1×NI; 2×ZN; 1×6QN;100.00
Assess
Isoform 22miq.1.Amonomer0.52281-349
2×ZN;60.87
Assess